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Publication
PropertyValue
Working Groups RG Cramer
SubprojectNone
Open AccessOpen Access Yes
Publication TypeJournal Article
Peer ReviewedYes
PMIDPubMed ID 35621159
DOIDOI 10.7554/elife.71533
Publication Year2022
TitleOct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells Wikidata
JournaleLife
ISSN2050-084X
eISSN2050-084X
URL http://dx.doi.org/10.7554/elife.71533
Volume11
Journal AbbreviationeLife
AuthorsXiong L, Tolen EA, Choi J, Velychko S, Caizzi L, Velychko T, Adachi K, MacCarthy CM, Lidschreiber M, Cramer P, Schöler HR
First AuthorXiong L
Last AuthorSchöler HR
ScholiaScholia Wikidata-based representation at Scholia

 External Resources

 elifesci.../71533  Article fulltext

 gro-2/108626  GRO.publications identifier

 GSE174774  NCBI GEO Dataset (GSE174774)

 GSE87822  NCBI GEO Dataset (GSE87822, reused)

 GSE90895  NCBI GEO Dataset (GSE90895, reused)

 10090  NCBI taxonomy (mouse, Mus musculus)

 0000-0001-8180-768X  ORCID identifier (Le Xiong)

 0000-0002-7147-7506  ORCID identifier (Erik A. Tolen)

 0000-0002-6227-3966  ORCID identifier (Sergiy Velychko)

 0000-0001-9723-6893  ORCID identifier (Livia Caizzi)

 0000-0001-8434-5441  ORCID identifier (Caitlin M. MacCarthy)

 0000-0002-6740-2755  ORCID identifier (Michael Lidschreiber)

 0000-0001-5454-7755  ORCID identifier (Patrick Cramer)

 0000-0003-2643-5136  ORCID identifier (Hans R. Schöler)

 314  Published Data Registry entry (MBExC, preprint)

 1/259  Research Data Archive (supplemental material)

 03av75f26  ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)

 05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 AB_628051  SciCrunch identifier (RRID:AB_628051)

 AB_2286684  SciCrunch identifier (RRID:AB_2286684)

 AB_386108  SciCrunch identifier (RRID:AB_386108)

 AB_302613  SciCrunch identifier (RRID:AB_302613)

 AB_477583  SciCrunch identifier (RRID:AB_477583)

 AB_2195800  SciCrunch identifier (RRID:AB_2195800)

 AB_354975  SciCrunch identifier (RRID:AB_354975)

 CVCL_C715  SciCrunch identifier (RRID:CVCL_C715)

 SCR_006442  SciCrunch identifier (RRID:SCR_006442, Bioconductor)

 SCR_005476  SciCrunch identifier (RRID:SCR_005476, Bowtie)

 SCR_011841  SciCrunch identifier (RRID:SCR_011841, cutadapt)

 SCR_001881  SciCrunch identifier (RRID:SCR_001881, DAVID)

 SCR_015687  SciCrunch identifier (RRID:SCR_015687, DESeq2)

 SCR_005807  SciCrunch identifier (RRID:SCR_005807, GREAT)

 SCR_005514  SciCrunch identifier (RRID:SCR_005514, HTSeq)

 SCR_003030  SciCrunch identifier (RRID:SCR_003030, JASPAR)

 SCR_018160  SciCrunch identifier (RRID:SCR_018160, LiftOver)

 SCR_013291  SciCrunch identifier (RRID:SCR_013291, MACS)

 SCR_001783  SciCrunch identifier (RRID:SCR_001783, MEME Suite)

 SCR_002105  SciCrunch identifier (RRID:SCR_002105, Samtools)

 SCR_015899  SciCrunch identifier (RRID:SCR_015899, STAR)

 github.com/loosolab/TOBIAS  Supplemental material (code)

 bio-prot...m=s4-1  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...m=s4-2  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...m=s4-3  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...m=s4-4  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...m=s4-5  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...m=s4-6  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...m=s4-7  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...m=s4-8  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...m=s4-9  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...=s4-10  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...=s4-11  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...=s4-12  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...=s4-13  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...=s4-14  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...=s4-15  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...=s4-16  Supplemental material (protocol on request at bio-protocol.org)

 bio-prot...=s4-17  Supplemental material (protocol on request at bio-protocol.org)

 Q112699248  Wikidata ID

Linked Antibodies

PIDAGTypeAntigen symbolAntibody Registry IDName
primary-0055primaryH3AB_302613Anti-Histone H3 antibody
primary-0111primaryTUBA4AAB_477583Anti-α-Tubulin antibody
primary-0468primaryPOU5F1AB_354975Human/Mouse Oct-3/4 Antibody
primary-0624primaryPOU5F1 AB_628051Anti-Oct-3/4 Antibody
primary-0671primarySOX2 AB_2195800SOX2, affinity purified antibody
primary-1033primarySOX2 AB_2286684Sox-2 Antibody (Y-17)
primary-1034primaryAB_386108Nanog Antibody