| Property |
Value |
| Working Groups |
RG Cramer |
| Subproject |
None |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
35621159 |
| DOI |
10.7554/elife.71533 |
| Publication Year |
2022 |
| Title |
Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells |
| Journal |
eLife |
| ISSN |
2050-084X |
| eISSN |
2050-084X |
| URL |
http://dx.doi.org/10.7554/elife.71533 |
| Volume |
11 |
| Journal Abbreviation |
eLife |
| Authors |
Xiong L, Tolen EA, Choi J, Velychko S, Caizzi L, Velychko T, Adachi K, MacCarthy CM, Lidschreiber M, Cramer P, Schöler HR |
| First Author |
Xiong L |
| Last Author |
Schöler HR |
External Resources
elifesci.../71533https://elifesciences.org/articles/71533 Article fulltext
2/108626http://resolver.sub.uni-goettingen.de/purl?2/108626 GRO.publications identifier
GSE174774https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE174774 NCBI GEO Dataset (GSE174774)
GSE87822https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE87822 NCBI GEO Dataset (GSE87822, reused)
GSE90895https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE90895 NCBI GEO Dataset (GSE90895, reused)
10090https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090 NCBI taxonomy (mouse, Mus musculus)
0000-0001-8180-768Xhttps://orcid.org/0000-0001-8180-768X ORCID identifier (Le Xiong)
0000-0002-7147-7506https://orcid.org/0000-0002-7147-7506 ORCID identifier (Erik A. Tolen)
0000-0002-6227-3966https://orcid.org/0000-0002-6227-3966 ORCID identifier (Sergiy Velychko)
0000-0001-9723-6893https://orcid.org/0000-0001-9723-6893 ORCID identifier (Livia Caizzi)
0000-0001-8434-5441https://orcid.org/0000-0001-8434-5441 ORCID identifier (Caitlin M. MacCarthy)
0000-0002-6740-2755https://orcid.org/0000-0002-6740-2755 ORCID identifier (Michael Lidschreiber)
0000-0001-5454-7755https://orcid.org/0000-0001-5454-7755 ORCID identifier (Patrick Cramer)
0000-0003-2643-5136https://orcid.org/0000-0003-2643-5136 ORCID identifier (Hans R. Schöler)
314https://prod.mbexc.uni-goettingen.de/literature/publications/314 Published Data Registry entry (MBExC, preprint)
1/259https://mbexc.uni-goettingen.de/archive/1/259 Research Data Archive (supplemental material)
040djv263https://ror.org/040djv263 ROR identifier (040djv263, Max Planck Institute for Molecular Biomedicine)
03av75f26https://ror.org/03av75f26 ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)
05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)
AB_628051https://scicrunch.org/resolver/AB_628051 SciCrunch identifier (RRID:AB_628051)
AB_2286684https://scicrunch.org/resolver/AB_2286684 SciCrunch identifier (RRID:AB_2286684)
AB_386108https://scicrunch.org/resolver/AB_386108 SciCrunch identifier (RRID:AB_386108)
AB_302613https://scicrunch.org/resolver/AB_302613 SciCrunch identifier (RRID:AB_302613)
AB_477583https://scicrunch.org/resolver/AB_477583 SciCrunch identifier (RRID:AB_477583)
AB_2195800https://scicrunch.org/resolver/AB_2195800 SciCrunch identifier (RRID:AB_2195800)
AB_354975https://scicrunch.org/resolver/AB_354975 SciCrunch identifier (RRID:AB_354975)
CVCL_C715https://scicrunch.org/resolver/CVCL_C715 SciCrunch identifier (RRID:CVCL_C715)
SCR_006442https://scicrunch.org/resolver/SCR_006442 SciCrunch identifier (RRID:SCR_006442, Bioconductor)
SCR_005476https://scicrunch.org/resolver/SCR_005476 SciCrunch identifier (RRID:SCR_005476, Bowtie)
SCR_011841https://scicrunch.org/resolver/SCR_011841 SciCrunch identifier (RRID:SCR_011841, cutadapt)
SCR_001881https://scicrunch.org/resolver/SCR_001881 SciCrunch identifier (RRID:SCR_001881, DAVID)
SCR_015687https://scicrunch.org/resolver/SCR_015687 SciCrunch identifier (RRID:SCR_015687, DESeq2)
SCR_005807https://scicrunch.org/resolver/SCR_005807 SciCrunch identifier (RRID:SCR_005807, GREAT)
SCR_005514https://scicrunch.org/resolver/SCR_005514 SciCrunch identifier (RRID:SCR_005514, HTSeq)
SCR_011867https://scicrunch.org/resolver/SCR_011867 SciCrunch identifier (RRID:SCR_011867, htseq-count)
SCR_003030https://scicrunch.org/resolver/SCR_003030 SciCrunch identifier (RRID:SCR_003030, JASPAR)
SCR_018160https://scicrunch.org/resolver/SCR_018160 SciCrunch identifier (RRID:SCR_018160, LiftOver)
SCR_013291https://scicrunch.org/resolver/SCR_013291 SciCrunch identifier (RRID:SCR_013291, MACS)
SCR_001783https://scicrunch.org/resolver/SCR_001783 SciCrunch identifier (RRID:SCR_001783, MEME Suite)
SCR_002105https://scicrunch.org/resolver/SCR_002105 SciCrunch identifier (RRID:SCR_002105, Samtools)
SCR_015899https://scicrunch.org/resolver/SCR_015899 SciCrunch identifier (RRID:SCR_015899, STAR)
github.com/loosolab/TOBIAShttps://github.com/loosolab/TOBIAS Supplemental material (code)
bio-prot...m=s4-1https://bio-protocol.org/eLIFErap71533?item=s4-1 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...m=s4-2https://bio-protocol.org/eLIFErap71533?item=s4-2 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...m=s4-3https://bio-protocol.org/eLIFErap71533?item=s4-3 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...m=s4-4https://bio-protocol.org/eLIFErap71533?item=s4-4 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...m=s4-5https://bio-protocol.org/eLIFErap71533?item=s4-5 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...m=s4-6https://bio-protocol.org/eLIFErap71533?item=s4-6 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...m=s4-7https://bio-protocol.org/eLIFErap71533?item=s4-7 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...m=s4-8https://bio-protocol.org/eLIFErap71533?item=s4-8 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...m=s4-9https://bio-protocol.org/eLIFErap71533?item=s4-9 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...=s4-10https://bio-protocol.org/eLIFErap71533?item=s4-10 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...=s4-11https://bio-protocol.org/eLIFErap71533?item=s4-11 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...=s4-12https://bio-protocol.org/eLIFErap71533?item=s4-12 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...=s4-13https://bio-protocol.org/eLIFErap71533?item=s4-13 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...=s4-14https://bio-protocol.org/eLIFErap71533?item=s4-14 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...=s4-15https://bio-protocol.org/eLIFErap71533?item=s4-15 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...=s4-16https://bio-protocol.org/eLIFErap71533?item=s4-16 Supplemental material (protocol on request at bio-protocol.org)
bio-prot...=s4-17https://bio-protocol.org/eLIFErap71533?item=s4-17 Supplemental material (protocol on request at bio-protocol.org)
Q112699248https://www.wikidata.org/wiki/Q112699248 Wikidata ID
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0055 |
 |
primary |
H3 |
AB_302613 |
Anti-Histone H3 antibody |
| primary-0111 |
 |
primary |
TUBA4A |
AB_477583 |
Anti-α-Tubulin antibody |
| primary-0468 |
 |
primary |
POU5F1 |
AB_354975 |
Human/Mouse Oct-3/4 Antibody |
| primary-0624 |
 |
primary |
POU5F1 |
AB_628051 |
Anti-Oct-3/4 Antibody |
| primary-0671 |
|
primary |
SOX2 |
AB_2195800 |
SOX2, affinity purified antibody |
| primary-1033 |
|
primary |
SOX2 |
AB_2286684 |
Sox-2 Antibody (Y-17) |
| primary-1034 |
|
primary |
|
AB_386108 |
Nanog Antibody |