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Publication

Property	Value
Working Groups	RG Zimmermann
Subproject	None
Open Access	Yes
Publication Type	Journal Article
Peer Reviewed	Yes
PMID	39317836
DOI	10.1038/s44161-024-00544-7
Publication Year	2024
Title	Evolution of translational control and the emergence of genes and open reading frames in human and non-human primate hearts
Journal	Nature Cardiovascular Research
ISSN	2731-0590
URL	http://dx.doi.org/10.1038/s44161-024-00544-7
Journal Abbreviation	Nat Cardiovasc Res
Authors	Ruiz-Orera J, Miller DC, Greiner J, Genehr C, Grammatikaki A, Blachut S, Mbebi J, Patone G, Myronova A, Adami E, Dewani N, Liang N, Hummel O, Muecke MB, Hildebrandt TB, Fritsch G, Schrade L, Zimmermann WH, Kondova I, Diecke S, van Heesch S, Hübner N
First Author	Ruiz-Orera J
Last Author	Hübner N

External Resources

12251https://www.addgene.org/12251 Addgene identifier (12251, reused)

12253https://www.addgene.org/12253 Addgene identifier (12253, reused)

12259https://www.addgene.org/12259 Addgene identifier (12259, reused)

86708https://www.addgene.org/86708 Addgene identifier (86708, reused)

nature.c...-7.pdfhttps://www.nature.com/articles/s44161-024-00544-7.pdf Article fulltext

E-MTAB-6798https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6798 EMBL ArrayExpress identifier (E-MTAB-6798, reused)

E-MTAB-6811https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6811 EMBL ArrayExpress identifier (E-MTAB-6811, reused)

E-MTAB-6813https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6813 EMBL ArrayExpress identifier (E-MTAB-6813, reused)

E-MTAB-6814https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6814 EMBL ArrayExpress identifier (E-MTAB-6814, reused)

E-MTAB-7247https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-7247 EMBL ArrayExpress identifier (E-MTAB-7247, reused)

PRJEB29208https://www.ebi.ac.uk/ena/data/view/PRJEB29208 EMBL-EBI ENA identifier (PRJEB29208, reused)

PRJEB65856https://www.ebi.ac.uk/ena/data/view/PRJEB65856 EMBL-EBI ENA identifier (PRJEB65856)

EGAD00001003391https://ega-archive.org/datasets/EGAD00001003391 EGA identifier (EGAD00001003391, reused)

EGAD00001004394https://ega-archive.org/datasets/EGAD00001004394 EGA identifier (EGAD00001004394, reused)

gro-2/145804http://resolver.sub.uni-goettingen.de/purl?gro-2/145804 GRO.publications identifier

SRP186138https://www.ncbi.nlm.nih.gov/sra/SRP186138 NCBI sra identifier (SRP186138)

9592https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9592 NCBI taxonomy (Gorilla)

9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 NCBI taxonomy (human, Homo sapiens)

9544https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9544 NCBI taxonomy (Rhesus monkey, Macaca mulatta)

0000-0002-8317-0034https://orcid.org/0000-0002-8317-0034 ORCID identifier (Jorge Ruiz-Orera)

0000-0002-7242-0341https://orcid.org/0000-0002-7242-0341 ORCID identifier (Giannino Patone)

0000-0002-2287-6674https://orcid.org/0000-0002-2287-6674 ORCID identifier (Nikita Dewani)

0009-0005-7249-1640https://orcid.org/0009-0005-7249-1640 ORCID identifier (Lisa Schrade)

0000-0003-1190-4040https://orcid.org/0000-0003-1190-4040 ORCID identifier (Wolfram Hubertus Zimmermann)

0000-0001-9593-1980https://orcid.org/0000-0001-9593-1980 ORCID identifier (Sebastiaan van Heesch)

0000-0002-1218-6223https://orcid.org/0000-0002-1218-6223 ORCID identifier (Norbert Hübner)

544https://sfb1002.med.uni-goettingen.de/production/literature/publications/544 Published Data Registry entry (CRC 1002)

1/513https://mbexc.uni-goettingen.de/archive/1/513 Research Data Archive (supplemental material)

02ahxbh87https://ror.org/02ahxbh87 ROR identifier (02ahxbh87, Biomedical Primate Research Centre)

01s1h3j07https://ror.org/01s1h3j07 ROR identifier (01s1h3j07, Fraunhofer Institute for Translational Medicine and Pharmacology)

031t5w623https://ror.org/031t5w623 ROR identifier (031t5w623, German Centre for Cardiovascular Research)

043j0f473https://ror.org/043j0f473 ROR identifier (043j0f473, German Center for Neurodegenerative Diseases)

038t36y30https://ror.org/038t36y30 ROR identifier (038t36y30, Heidelberg University)

05nywn832https://ror.org/05nywn832 ROR identifier (05nywn832, Leibniz Institute for Zoo and Wildlife Research)

04p5ggc03https://ror.org/04p5ggc03 ROR identifier (04p5ggc03, Max Delbrück Center for Molecular Medicine)

05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)

01n92vv28https://ror.org/01n92vv28 ROR identifier (01n92vv28, Oncode Institute)

02aj7yc53https://ror.org/02aj7yc53 ROR identifier (02aj7yc53, Princess Máxima Center)

021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)

SCR_017344https://scicrunch.org/resolver/SCR_017344 SciCrunch identifier (RRID:SCR_017344, Cell Ranger)

SCR_015687https://scicrunch.org/resolver/SCR_015687 SciCrunch identifier (RRID:SCR_015687, DESeq2)

SCR_002344https://scicrunch.org/resolver/SCR_002344 SciCrunch identifier (RRID:SCR_002344, Ensembl)

SCR_006809https://scicrunch.org/resolver/SCR_006809 SciCrunch identifier (RRID:SCR_006809, g:Profiler)

SCR_022798https://scicrunch.org/resolver/SCR_022798 SciCrunch identifier (RRID:SCR_022798, harmonypy)

SCR_005829https://scicrunch.org/resolver/SCR_005829 SciCrunch identifier (RRID:SCR_005829, InterProScan)

SCR_004870https://scicrunch.org/resolver/SCR_004870 SciCrunch identifier (RRID:SCR_004870, NCBI BLAST)

SCR_018139https://scicrunch.org/resolver/SCR_018139 SciCrunch identifier (RRID:SCR_018139, scanpy)

SCR_015899https://scicrunch.org/resolver/SCR_015899 SciCrunch identifier (RRID:SCR_015899, STAR)

SCR_016323https://scicrunch.org/resolver/SCR_016323 SciCrunch identifier (RRID:SCR_016323, StringTie)

SCR_005780https://scicrunch.org/resolver/SCR_005780 SciCrunch identifier (RRID:SCR_005780, UCSC Genome Browser)

static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM1_ESM.pdf Supplemental material

github.c...l_2024https://github.com/jorruior/RuizOrera_etal_2024 Supplemental material (code)

github.com/facebookresearch/esmhttps://github.com/facebookresearch/esm Supplemental material (code, reused)

github.com/lcalviell/ORFquanthttps://github.com/lcalviell/ORFquant Supplemental material (code, reused)

goeseek.gwdguser.de/studies/202https://goeseek.gwdguser.de/studies/202 Supplemental material (goeseek study)

static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM2_ESM.pdf Supplemental material (reporting summary)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM3_ESM.xlsx Supplemental material (table)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM4_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM5_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM6_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM7_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM8_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM9_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM10_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM11_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM12_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM13_ESM.xlsx Supplemental material (source data)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs44161-024-00544-7/MediaObjects/44161_2024_544_MOESM14_ESM.xlsx Supplemental material (source data)

mbexc.de...earts/https://mbexc.de/evolution-of-translational-control-and-the-emergence-of-genes-and-open-reading-frames-in-human-and-non-human-primate-hearts/ Website entry (mbexc.de)

Linked Antibodies

PID	Type	Antigen symbol	Antibody Registry ID	Name
primary-0102	primary	ACTN2	AB_476766	Anti-α-Actinin (Sarcomeric) antibody
primary-0622	primary	NKX2-5	AB_355269	NKX2.5 Antibody
primary-1021	primary	POU5F1	AB_2167703	Oct-3/4 Antibody (H-134)
primary-1159	primary	MYL2	AB_2147453	Myosin Light Chain 2/MLC-2V Polyclonal antibody
primary-1716	primary	SSEA4		SSEA4 (MC813) Mouse mAb
primary-1717	primary		AB_2119059	TRA-1-60(S) (TRA-1-60(S)) Mouse mAb
primary-1718	primary			Anti-Cardiac Troponin T antibody [1F11]
primary-1720	primary	TNNT2	AB_2751735	Cardiac Troponin T Antibody, anti-human/mouse/rat, REAfinity™
primary-1721	primary	MYL2	AB_2652947	MLC2v Antibody, anti-human/mouse/rat, REAfinity™
primary-1722	primary		AB_2733688	REA Control Antibody, human IgG1, REAfinity™
primary-1723	primary		AB_2733446	REA Control Antibody, human IgG1, REAfinity™
secondary-0021	secondary		AB_2534102	Donkey anti-Goat IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488
secondary-0392	secondary		AB_2535792	Donkey anti-Rabbit IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 488
secondary-0394	secondary		AB_141607	Donkey anti-Mouse IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 488
secondary-1719	secondary		AB_2535711	Goat anti-Mouse IgM (Heavy chain) Cross-Adsorbed Secondary Antibody, Alexa Fluor™ 488