| Property |
Value |
| Working Groups |
RG Fischer |
| Subproject |
None |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
40548942 |
| DOI |
10.1093/nar/gkaf539 |
| Publication Year |
2025 |
| Title |
The lincRNA Pantr1 is a FOXG1 target gene conferring site-specific chromatin binding of FOXG1 |
| Journal |
Nucleic Acids Research |
| ISSN |
0305-1048 |
| eISSN |
1362-4962 |
| URL |
https://doi.org/10.1093/nar/gkaf539 |
| Issue |
12 |
| Volume |
53 |
| Journal Abbreviation |
Nucleic Acids Res |
| Authors |
Gather F, Rauleac T, Akol I, Arumugam G, Fullio C, Müller T, Kleidonas D, Geiss-Friedlander R, Fischer A, Vlachos A, Backofen R, Vogel T |
| First Author |
Gather F |
| Last Author |
Vogel T |
External Resources
12259https://www.addgene.org/12259 Addgene identifier (12259, reused)
12260https://www.addgene.org/12260 Addgene identifier (12260, reused)
academic...39.pdfhttps://academic.oup.com/nar/article-pdf/53/12/gkaf539/63551331/gkaf539.pdf Article fulltext
10.6084/m9.figshare.26788915https://doi.org/10.6084/m9.figshare.26788915 Figshare DOI (DOI:10.6084/m9.figshare.26788915)
10.6084/m9.figshare.28869728https://doi.org/10.6084/m9.figshare.28869728 Figshare DOI (DOI:10.6084/m9.figshare.28869728)
2/150450https://publications.goettingen-research-online.de/handle/2/150450 GRO.publications identifier
MSV000097629https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=MSV000097629 MassIVE identifier (MSV000097629, DOI: 10.25345/C5DR2PN2B)
GSE272852https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272852 NCBI GEO Dataset (GSE272852)
GSE272853https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272853 NCBI GEO Dataset (GSE272853)
GSE272854https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272854 NCBI GEO Dataset (GSE272854)
GSE273180https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273180 NCBI GEO Dataset (GSE273180)
GSE95833https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE95833 NCBI GEO Dataset (GSE95833, reused)
GSE106801https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE106801 NCBI GEO Dataset (GSE106801, reused)
GSE172220https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE172220 NCBI GEO Dataset (GSE172220, reused)
GSE189119https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE189119 NCBI GEO Dataset (GSE189119, reused)
9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 NCBI taxonomy (human, Homo sapiens)
10090https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090 NCBI taxonomy (mouse, Mus musculus)
0000-0001-9715-1582https://orcid.org/0000-0001-9715-1582 ORCID identifier (Fabian Gather)
0000-0003-0842-6201https://orcid.org/0000-0003-0842-6201 ORCID identifier (Ipek Akol)
0000-0002-1061-8758https://orcid.org/0000-0002-1061-8758 ORCID identifier (Camila L. Fullio)
0000-0003-1252-9684https://orcid.org/0000-0003-1252-9684 ORCID identifier (Teresa Müller)
0000-0002-4533-4341https://orcid.org/0000-0002-4533-4341 ORCID identifier (Dimitrios Kleidonas)
0000-0002-1720-3440https://orcid.org/0000-0002-1720-3440 ORCID identifier (Ruth Geiss-Friedlander)
0000-0001-8546-1161https://orcid.org/0000-0001-8546-1161 ORCID identifier (André Fischer)
0000-0002-2646-3770https://orcid.org/0000-0002-2646-3770 ORCID identifier (Andreas Vlachos)
0000-0001-8231-3323https://orcid.org/0000-0001-8231-3323 ORCID identifier (Rolf Backofen)
0000-0002-0602-9133https://orcid.org/0000-0002-0602-9133 ORCID identifier (Tanja Vogel)
PXD056060http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD056060 Pride proteome dataset (PXD056060)
PXD062978http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD062978 Pride proteome dataset (PXD062978)
1140https://prod.mbexc.uni-goettingen.de/literature/publications/1140 Published Data Registry entry (MBExC, preprint)
1/626https://mbexc.uni-goettingen.de/archive/1/626 Research Data Archive (supplemental material)
043j0f473https://ror.org/043j0f473 ROR identifier (043j0f473, German Center for Neurodegenerative Diseases)
05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
0245cg223https://ror.org/0245cg223 ROR identifier (0245cg223, University of Freiburg)
CVCL_0063https://scicrunch.org/resolver/CVCL_0063 SciCrunch identifier (RRID:CVCL_0063, HEK293T)
IMSR_JAX:004337https://scicrunch.org/resolver/IMSR_JAX:004337 SciCrunch identifier (RRID:IMSR_JAX:004337, 129(Cg)-Foxg1tm1(cre)Skm/J)
SCR_006442https://scicrunch.org/resolver/SCR_006442 SciCrunch identifier (RRID:SCR_006442, Bioconductor)
SCR_005476https://scicrunch.org/resolver/SCR_005476 SciCrunch identifier (RRID:SCR_005476, Bowtie)
SCR_016884https://scicrunch.org/resolver/SCR_016884 SciCrunch identifier (RRID:SCR_016884, clusterProfiler)
SCR_015687https://scicrunch.org/resolver/SCR_015687 SciCrunch identifier (RRID:SCR_015687, DESeq2)
SCR_012918https://scicrunch.org/resolver/SCR_012918 SciCrunch identifier (RRID:SCR_012918, DiffBind)
SCR_018931https://scicrunch.org/resolver/SCR_018931 SciCrunch identifier (RRID:SCR_018931, EnhancedVolcano)
SCR_012919https://scicrunch.org/resolver/SCR_012919 SciCrunch identifier (RRID:SCR_012919, featureCounts)
SCR_006281https://scicrunch.org/resolver/SCR_006281 SciCrunch identifier (RRID:SCR_006281, Galaxy)
SCR_014601https://scicrunch.org/resolver/SCR_014601 SciCrunch identifier (RRID:SCR_014601, ggplot2)
SCR_025300https://scicrunch.org/resolver/SCR_025300 SciCrunch identifier (RRID:SCR_025300, ggvenn)
SCR_002798https://scicrunch.org/resolver/SCR_002798 SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)
SCR_016386https://scicrunch.org/resolver/SCR_016386 SciCrunch identifier (RRID:SCR_016386, Illumina HiSeq 3000/HiSeq 4000 System)
SCR_013291https://scicrunch.org/resolver/SCR_013291 SciCrunch identifier (RRID:SCR_013291, MACS)
SCR_016418https://scicrunch.org/resolver/SCR_016418 SciCrunch identifier (RRID:SCR_016418, pheatmap)
SCR_025312https://scicrunch.org/resolver/SCR_025312 SciCrunch identifier (RRID:SCR_025312, pyGenomeTracks)
SCR_008394https://scicrunch.org/resolver/SCR_008394 SciCrunch identifier (RRID:SCR_008394, Python)
SCR_001905https://scicrunch.org/resolver/SCR_001905 SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)
SCR_007322https://scicrunch.org/resolver/SCR_007322 SciCrunch identifier (RRID:SCR_007322, Seurat)
SCR_015899https://scicrunch.org/resolver/SCR_015899 SciCrunch identifier (RRID:SCR_015899, STAR)
P55316https://www.uniprot.org/uniprot/P55316 UniProt identifier (P55316, reused)
Q60987https://www.uniprot.org/uniprot/Q60987 UniProt identifier (Q60987, reused)
mbexc.de...foxg1/https://mbexc.de/the-lincrna-pantr1-is-a-foxg1-target-gene-conferring-site-specific-chromatin-binding-of-foxg1/ Website entry (mbexc.de)
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0230 |
|
primary |
PAX6 |
AB_2565003 |
Purified anti-Pax-6 Antibody |
| primary-0260 |
 |
primary |
MAP2 |
AB_776174 |
Anti-MAP2 antibody |
| primary-0535 |
 |
primary |
SLC17A7 |
AB_887875 |
VGLUT 1 antibody |
| primary-0794 |
 |
primary |
TUBB3 |
AB_2313773 |
Purified anti-Tubulin β 3 (TUBB3) Antibody |
| primary-0848 |
|
primary |
RBFOX3 |
AB_2532109 |
Recombinant Anti-NeuN antibody [EPR12763] - Neuronal Marker |
| primary-0930 |
|
primary |
TBR1 |
AB_2200219 |
Anti-TBR1 antibody |
| primary-1297 |
|
primary |
FOXG1 |
AB_2793554 |
FOXG1 antibody (pAb) |
| primary-1299 |
|
primary |
NeuroD1 |
AB_10861489 |
NeuroD1 antibody [EPR4008] |
| primary-1904 |
|
primary |
FOXG1 |
AB_2892604 |
Anti-FOXG1 antibody [EPR18987] |
| primary-1905 |
|
primary |
GFAP |
AB_2532994 |
GFAP Monoclonal Antibody (2.2B10) |
| primary-1907 |
|
primary |
EOMES |
AB_11042577 |
EOMES Monoclonal Antibody (Dan11mag), eBioscience™ |
| primary-1908 |
|
primary |
VGLUT2 |
AB_1603114 |
Anti-VGLUT2 antibody [8G9.2] |
| primary-1936 |
|
primary |
FOXG1 |
AB_10666257 |
Anti-FOXG1, (N-terminal) antibody produced in rabbit |
| primary-1937 |
|
primary |
DDX5 |
AB_2616008 |
DDX5 (D15E10) XP® Rabbit mAb |
| primary-1938 |
|
primary |
PURB |
AB_11155516 |
Anti-Pur B antibody |
| secondary-0571 |
 |
secondary |
|
AB_2535794 |
Donkey anti-Rat IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 |
| secondary-0805 |
 |
secondary |
|
AB_2341099 |
Alexa Fluor® 488 AffiniPure Donkey Anti-Mouse IgG (H+L) |
| secondary-1780 |
|
secondary |
|
AB_2313584 |
Alexa Fluor® 488 AffiniPure™ Donkey Anti-Rabbit IgG (H+L) |
| secondary-1909 |
|
secondary |
|
AB_2340855 |
Donkey IgG anti-Mouse IgG (H+L)-Alexa Fluor 594, MinX |
| secondary-1910 |
|
secondary |
|
AB_2340621 |
Donkey IgG anti-Rabbit IgG (H+L)-Alexa Fluor 594, MinX |