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Publication
PropertyValue
Working Groups RG Fischer
SubprojectNone
Open AccessOpen Access Yes
Publication TypePreprint
Peer ReviewedNo
DOIDOI 10.1101/2024.08.29.610239
Publication Year2024
TitleThe lincRNA Pantr1 is a FOXG1 target gene conferring site-specific chromatin binding of FOXG1
JournalbioRxiv
ISSNno ISSN (NLM ID:101680187)
URL https://doi.org/10.1101/2024.08.29.610239
Journal AbbreviationbioRxiv
ExtraNot yet finally published in a peer-reviewed journal
AuthorsGather F, Rauleac T, Akol I, Arumugam G, Fullio CL, Müller T, Kleidonas D, Fischer A, Vlachos A, Backofen R, Vogel T
First AuthorGather F
Last AuthorVogel T

 External Resources

 12260  Addgene identifier (12260, reused)

 biorxiv....ll.pdf  Article fulltext

 9606  NCBI taxonomy (human, Homo sapiens)

 10090  NCBI taxonomy (mouse, Mus musculus)

 0000-0001-9715-1582  ORCID identifier (Fabian Gather)

 0000-0003-0842-6201  ORCID identifier (Ipek Akol)

 0000-0002-1061-8758  ORCID identifier (Camila L. Fullio)

 0000-0002-4533-4341  ORCID identifier (Dimitrios Kleidonas)

 0000-0001-8546-1161  ORCID identifier (André Fischer)

 0000-0002-2646-3770  ORCID identifier (Andreas Vlachos)

 0000-0001-8231-3323  ORCID identifier (Rolf Backofen)

 0000-0002-0602-9133  ORCID identifier (Tanja Vogel)

 1/612  Research Data Archive (supplemental material)

 043j0f473  ROR identifier (043j0f473, German Center for Neurodegenerative Diseases)

 05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 0245cg223  ROR identifier (0245cg223, University of Freiburg)

 CVCL_0063  SciCrunch identifier (RRID:CVCL_0063, HEK293T)

 IMSR_JAX:004337  SciCrunch identifier (RRID:IMSR_JAX:004337, 129(Cg)-Foxg1tm1(cre)Skm/J)

 SCR_005476  SciCrunch identifier (RRID:SCR_005476, Bowtie)

 SCR_016884  SciCrunch identifier (RRID:SCR_016884, clusterProfiler)

 SCR_016366  SciCrunch identifier (RRID:SCR_016366, Deeptools)

 SCR_015687  SciCrunch identifier (RRID:SCR_015687, DESeq2)

 SCR_012918  SciCrunch identifier (RRID:SCR_012918, DiffBind)

 SCR_018931  SciCrunch identifier (RRID:SCR_018931, EnhancedVolcano)

 SCR_014583  SciCrunch identifier (RRID:SCR_014583, FastQC)

 SCR_012919  SciCrunch identifier (RRID:SCR_012919, featureCounts)

 SCR_006281  SciCrunch identifier (RRID:SCR_006281, Galaxy)

 SCR_014601  SciCrunch identifier (RRID:SCR_014601, ggplot2)

 SCR_002798  SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)

 SCR_013291  SciCrunch identifier (RRID:SCR_013291, MACS)

 SCR_016418  SciCrunch identifier (RRID:SCR_016418, pheatmap)

 SCR_025312  SciCrunch identifier (RRID:SCR_025312, pyGenomeTracks)

 SCR_008394  SciCrunch identifier (RRID:SCR_008394, Python)

 SCR_001905  SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

 SCR_007322  SciCrunch identifier (RRID:SCR_007322, Seurat)

 SCR_015899  SciCrunch identifier (RRID:SCR_015899, STAR)

 biorxiv....d=true  Supplemental material

 mbexc.de...foxg1/  Website entry (mbexc.de)

Linked Antibodies

PIDAGTypeAntigen symbolAntibody Registry IDName
primary-0260primaryMAP2AB_776174Anti-MAP2 antibody
primary-0535primarySLC17A7 AB_887875VGLUT 1 antibody
primary-0794primaryTUBB3 AB_2313773Purified anti-Tubulin β 3 (TUBB3) Antibody
primary-0848primaryRBFOX3AB_2532109Recombinant Anti-NeuN antibody [EPR12763] - Neuronal Marker
primary-0930primaryTBR1 AB_2200219Anti-TBR1 antibody
primary-1904primaryFOXG1AB_2892604Anti-FOXG1 antibody [EPR18987]
primary-1905primaryGFAPAB_2532994GFAP Monoclonal Antibody (2.2B10)
primary-1906primaryPax-6AB_2565003Purified anti-Pax-6 Antibody
primary-1907primaryEOMESAB_11042577EOMES Monoclonal Antibody (Dan11mag), eBioscience™
primary-1908primaryVGLUT2AB_1603114Anti-VGLUT2 antibody [8G9.2]
secondary-0805secondaryAB_2341099Alexa Fluor® 488 AffiniPure Donkey Anti-Mouse IgG (H+L)
secondary-1780secondaryAB_2313584Alexa Fluor® 488 AffiniPure™ Donkey Anti-Rabbit IgG (H+L)
secondary-1909secondaryAB_2340855Donkey IgG anti-Mouse IgG (H+L)-Alexa Fluor 594, MinX
secondary-1910secondaryAB_2340621Donkey IgG anti-Rabbit IgG (H+L)-Alexa Fluor 594, MinX
secondary-1911secondaryAB_10562718Donkey anti-Rat IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor™ 488
secondary-1912secondaryAB_2313500Streptavidin, Alexa Fluor™ 633 conjugate