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Publication

Property	Value
Working Groups	RG Fischer
Subproject	None
Open Access	Yes
Publication Type	Journal Article
Peer Reviewed	Yes
PMID	40548942
DOI	10.1093/nar/gkaf539
Publication Year	2025
Title	The lincRNA Pantr1 is a FOXG1 target gene conferring site-specific chromatin binding of FOXG1
Journal	Nucleic Acids Research
ISSN	0305-1048
eISSN	1362-4962
URL	https://doi.org/10.1093/nar/gkaf539
Issue	12
Volume	53
Journal Abbreviation	Nucleic Acids Res
Authors	Gather F, Rauleac T, Akol I, Arumugam G, Fullio C, Müller T, Kleidonas D, Geiss-Friedlander R, Fischer A, Vlachos A, Backofen R, Vogel T
First Author	Gather F
Last Author	Vogel T

External Resources

12259https://www.addgene.org/12259 Addgene identifier (12259, reused)

12260https://www.addgene.org/12260 Addgene identifier (12260, reused)

academic...39.pdfhttps://academic.oup.com/nar/article-pdf/53/12/gkaf539/63551331/gkaf539.pdf Article fulltext

10.6084/m9.figshare.26788915https://doi.org/10.6084/m9.figshare.26788915 Figshare DOI (DOI:10.6084/m9.figshare.26788915)

10.6084/m9.figshare.28869728https://doi.org/10.6084/m9.figshare.28869728 Figshare DOI (DOI:10.6084/m9.figshare.28869728)

MSV000097629https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=MSV000097629 MassIVE identifier (MSV000097629, DOI: 10.25345/C5DR2PN2B)

GSE272852https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272852 NCBI GEO Dataset (GSE272852)

GSE272853https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272853 NCBI GEO Dataset (GSE272853)

GSE272854https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272854 NCBI GEO Dataset (GSE272854)

GSE273180https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273180 NCBI GEO Dataset (GSE273180)

GSE95833https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE95833 NCBI GEO Dataset (GSE95833, reused)

GSE106801https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE106801 NCBI GEO Dataset (GSE106801, reused)

GSE172220https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE172220 NCBI GEO Dataset (GSE172220, reused)

GSE189119https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE189119 NCBI GEO Dataset (GSE189119, reused)

9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 NCBI taxonomy (human, Homo sapiens)

10090https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090 NCBI taxonomy (mouse, Mus musculus)

0000-0001-9715-1582https://orcid.org/0000-0001-9715-1582 ORCID identifier (Fabian Gather)

0000-0003-0842-6201https://orcid.org/0000-0003-0842-6201 ORCID identifier (Ipek Akol)

0000-0002-1061-8758https://orcid.org/0000-0002-1061-8758 ORCID identifier (Camila L. Fullio)

0000-0003-1252-9684https://orcid.org/0000-0003-1252-9684 ORCID identifier (Teresa Müller)

0000-0002-4533-4341https://orcid.org/0000-0002-4533-4341 ORCID identifier (Dimitrios Kleidonas)

0000-0002-1720-3440https://orcid.org/0000-0002-1720-3440 ORCID identifier (Ruth Geiss-Friedlander)

0000-0001-8546-1161https://orcid.org/0000-0001-8546-1161 ORCID identifier (André Fischer)

0000-0002-2646-3770https://orcid.org/0000-0002-2646-3770 ORCID identifier (Andreas Vlachos)

0000-0001-8231-3323https://orcid.org/0000-0001-8231-3323 ORCID identifier (Rolf Backofen)

0000-0002-0602-9133https://orcid.org/0000-0002-0602-9133 ORCID identifier (Tanja Vogel)

PXD056060http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD056060 Pride proteome dataset (PXD056060)

PXD062978http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD062978 Pride proteome dataset (PXD062978)

1/626https://mbexc.uni-goettingen.de/archive/1/626 Research Data Archive (supplemental material)

043j0f473https://ror.org/043j0f473 ROR identifier (043j0f473, German Center for Neurodegenerative Diseases)

05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)

021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)

0245cg223https://ror.org/0245cg223 ROR identifier (0245cg223, University of Freiburg)

CVCL_0063https://scicrunch.org/resolver/CVCL_0063 SciCrunch identifier (RRID:CVCL_0063, HEK293T)

IMSR_JAX:004337https://scicrunch.org/resolver/IMSR_JAX:004337 SciCrunch identifier (RRID:IMSR_JAX:004337, 129(Cg)-Foxg1tm1(cre)Skm/J)

SCR_006442https://scicrunch.org/resolver/SCR_006442 SciCrunch identifier (RRID:SCR_006442, Bioconductor)

SCR_005476https://scicrunch.org/resolver/SCR_005476 SciCrunch identifier (RRID:SCR_005476, Bowtie)

SCR_016884https://scicrunch.org/resolver/SCR_016884 SciCrunch identifier (RRID:SCR_016884, clusterProfiler)

SCR_015687https://scicrunch.org/resolver/SCR_015687 SciCrunch identifier (RRID:SCR_015687, DESeq2)

SCR_012918https://scicrunch.org/resolver/SCR_012918 SciCrunch identifier (RRID:SCR_012918, DiffBind)

SCR_018931https://scicrunch.org/resolver/SCR_018931 SciCrunch identifier (RRID:SCR_018931, EnhancedVolcano)

SCR_012919https://scicrunch.org/resolver/SCR_012919 SciCrunch identifier (RRID:SCR_012919, featureCounts)

SCR_006281https://scicrunch.org/resolver/SCR_006281 SciCrunch identifier (RRID:SCR_006281, Galaxy)

SCR_014601https://scicrunch.org/resolver/SCR_014601 SciCrunch identifier (RRID:SCR_014601, ggplot2)

SCR_025300https://scicrunch.org/resolver/SCR_025300 SciCrunch identifier (RRID:SCR_025300, ggvenn)

SCR_002798https://scicrunch.org/resolver/SCR_002798 SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)

SCR_016386https://scicrunch.org/resolver/SCR_016386 SciCrunch identifier (RRID:SCR_016386, Illumina HiSeq 3000/HiSeq 4000 System)

SCR_013291https://scicrunch.org/resolver/SCR_013291 SciCrunch identifier (RRID:SCR_013291, MACS)

SCR_016418https://scicrunch.org/resolver/SCR_016418 SciCrunch identifier (RRID:SCR_016418, pheatmap)

SCR_025312https://scicrunch.org/resolver/SCR_025312 SciCrunch identifier (RRID:SCR_025312, pyGenomeTracks)

SCR_008394https://scicrunch.org/resolver/SCR_008394 SciCrunch identifier (RRID:SCR_008394, Python)

SCR_001905https://scicrunch.org/resolver/SCR_001905 SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

SCR_007322https://scicrunch.org/resolver/SCR_007322 SciCrunch identifier (RRID:SCR_007322, Seurat)

SCR_015899https://scicrunch.org/resolver/SCR_015899 SciCrunch identifier (RRID:SCR_015899, STAR)

P55316https://www.uniprot.org/uniprot/P55316 UniProt identifier (P55316, reused)

Q60987https://www.uniprot.org/uniprot/Q60987 UniProt identifier (Q60987, reused)

mbexc.de...foxg1/https://mbexc.de/the-lincrna-pantr1-is-a-foxg1-target-gene-conferring-site-specific-chromatin-binding-of-foxg1/ Website entry (mbexc.de)

Linked Antibodies

PID	Type	Antigen symbol	Antibody Registry ID	Name
primary-0230	primary	PAX6	AB_2565003	Purified anti-Pax-6 Antibody
primary-0260	primary	MAP2	AB_776174	Anti-MAP2 antibody
primary-0535	primary	SLC17A7	AB_887875	VGLUT 1 antibody
primary-0794	primary	TUBB3	AB_2313773	Purified anti-Tubulin β 3 (TUBB3) Antibody
primary-0848	primary	RBFOX3	AB_2532109	Recombinant Anti-NeuN antibody [EPR12763] - Neuronal Marker
primary-0930	primary	TBR1	AB_2200219	Anti-TBR1 antibody
primary-1297	primary	FOXG1	AB_2793554	FOXG1 antibody (pAb)
primary-1299	primary	NeuroD1	AB_10861489	NeuroD1 antibody [EPR4008]
primary-1904	primary	FOXG1	AB_2892604	Anti-FOXG1 antibody [EPR18987]
primary-1905	primary	GFAP	AB_2532994	GFAP Monoclonal Antibody (2.2B10)
primary-1907	primary	EOMES	AB_11042577	EOMES Monoclonal Antibody (Dan11mag), eBioscience™
primary-1908	primary	VGLUT2	AB_1603114	Anti-VGLUT2 antibody [8G9.2]
primary-1936	primary	FOXG1	AB_10666257	Anti-FOXG1, (N-terminal) antibody produced in rabbit
primary-1937	primary	DDX5	AB_2616008	DDX5 (D15E10) XP® Rabbit mAb
primary-1938	primary	PURB	AB_11155516	Anti-Pur B antibody
secondary-0571	secondary		AB_2535794	Donkey anti-Rat IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 488
secondary-0805	secondary		AB_2341099	Alexa Fluor® 488 AffiniPure Donkey Anti-Mouse IgG (H+L)
secondary-1780	secondary		AB_2313584	Alexa Fluor® 488 AffiniPure™ Donkey Anti-Rabbit IgG (H+L)
secondary-1909	secondary		AB_2340855	Donkey IgG anti-Mouse IgG (H+L)-Alexa Fluor 594, MinX
secondary-1910	secondary		AB_2340621	Donkey IgG anti-Rabbit IgG (H+L)-Alexa Fluor 594, MinX

Technical Support: menoci@medizin.uni-goettingen.de

Department of Medical Informatics
University Medical Center Göttingen
Imprint

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External Resources

Linked Antibodies

Technical support

Links

Spokesperson

Prof. Dr. Tobias Moser

Spokesperson of Cluster of Excellence