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 External Resources

 62988https://www.addgene.org/62988  Addgene identifier (62988, reused)

 academic...02.pdfhttps://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad1202/54638105/gkad1202.pdf  Article fulltext

 U13369.1https://www.ebi.ac.uk/ena/data/view/U13369.1  EMBL-EBI ENA identifier (U13369.1)

 gro-2/139754http://resolver.sub.uni-goettingen.de/purl?gro-2/139754  GRO.publications identifier

 GSE230431https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230431  NCBI GEO Dataset (GSE230431)

 GSE230432https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230432  NCBI GEO Dataset (GSE230432)

 GSE230637https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230637  NCBI GEO Dataset (GSE230637)

 GSE235949https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235949  NCBI GEO Dataset (GSE235949)

 NM_001358.2https://www.ncbi.nlm.nih.gov/nuccore/NM_001358.2  NCBI nucleotide (NM_001358.2, reused)

 NM_004741.5https://www.ncbi.nlm.nih.gov/nuccore/NM_004741.5  NCBI nucleotide (NM_004741.5, reused)

 NM_001396855.1https://www.ncbi.nlm.nih.gov/nuccore/NM_001396855.1  NCBI nucleotide (NM_001396855.1, reused)

 U13369.1https://www.ncbi.nlm.nih.gov/nuccore/U13369.1  NCBI nucleotide (U13369.1, reused)

 0000-0001-7545-1656https://orcid.org/0000-0001-7545-1656  ORCID identifier (Nicolas Lemus-Diaz)

 0000-0001-7551-1073https://orcid.org/0000-0001-7551-1073  ORCID identifier (Argyris Papantonis)

 0000-0003-1837-5233https://orcid.org/0000-0003-1837-5233  ORCID identifier (Henning Urlaub)

 0000-0001-7143-2810https://orcid.org/0000-0001-7143-2810  ORCID identifier (Henrik Nielsen)

 0000-0001-6035-4255https://orcid.org/0000-0001-6035-4255  ORCID identifier (Katherine Elizabeth Bohnsack)

 0000-0001-7063-5456https://orcid.org/0000-0001-7063-5456  ORCID identifier (Markus T. Bohnsack)

 PXD043301http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD043301  Pride proteome dataset (PXD043301)

 25https://rdp.sfb1565.uni-goettingen.de/literature/publications/25  Published Data Registry entry (CRC 1565)

 1/448https://mbexc.uni-goettingen.de/archive/1/448  Research Data Archive (supplemental material)

 03av75f26https://ror.org/03av75f26  ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)

 05xy1nn52https://ror.org/05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 021ft0n22https://ror.org/021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 035b05819https://ror.org/035b05819  ROR identifier (035b05819, University of Copenhagen)

 01y9bpm73https://ror.org/01y9bpm73  ROR identifier (01y9bpm73, University of Göttingen)

 CVCL_0045https://scicrunch.org/resolver/CVCL_0045  SciCrunch identifier (RRID:CVCL_0045, HEK293)

 SCR_001456https://scicrunch.org/resolver/SCR_001456  SciCrunch identifier (RRID:SCR_001456, BD FACSDiva Software)

 SCR_006646https://scicrunch.org/resolver/SCR_006646  SciCrunch identifier (RRID:SCR_006646, BEDTools)

 SCR_016368https://scicrunch.org/resolver/SCR_016368  SciCrunch identifier (RRID:SCR_016368, Bowtie 2)

 SCR_015687https://scicrunch.org/resolver/SCR_015687  SciCrunch identifier (RRID:SCR_015687, DESeq2)

 SCR_014583https://scicrunch.org/resolver/SCR_014583  SciCrunch identifier (RRID:SCR_014583, FastQC)

 SCR_002285https://scicrunch.org/resolver/SCR_002285  SciCrunch identifier (RRID:SCR_002285, Fiji)

 SCR_002205https://scicrunch.org/resolver/SCR_002205  SciCrunch identifier (RRID:SCR_002205, flowCore)

 SCR_020123https://scicrunch.org/resolver/SCR_020123  SciCrunch identifier (RRID:SCR_020123, Illumina HiSeq2500)

 SCR_016386https://scicrunch.org/resolver/SCR_016386  SciCrunch identifier (RRID:SCR_016386, Illumina HiSeq 3000/HiSeq 4000 System)

 SCR_013715https://scicrunch.org/resolver/SCR_013715  SciCrunch identifier (RRID:SCR_013715, Image Studio Lite)

 SCR_011793https://scicrunch.org/resolver/SCR_011793  SciCrunch identifier (RRID:SCR_011793, Integrative Genomics Viewer)

 SCR_010943https://scicrunch.org/resolver/SCR_010943  SciCrunch identifier (RRID:SCR_010943, LIMMA)

 SCR_003152https://scicrunch.org/resolver/SCR_003152  SciCrunch identifier (RRID:SCR_003152, miRBase)

 SCR_012042https://scicrunch.org/resolver/SCR_012042  SciCrunch identifier (RRID:SCR_012042, OpenMS)

 SCR_006525https://scicrunch.org/resolver/SCR_006525  SciCrunch identifier (RRID:SCR_006525, Picard)

 SCR_001905https://scicrunch.org/resolver/SCR_001905  SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

 SCR_002105https://scicrunch.org/resolver/SCR_002105  SciCrunch identifier (RRID:SCR_002105, Samtools)

 SCR_004463https://scicrunch.org/resolver/SCR_004463  SciCrunch identifier (RRID:SCR_004463, STAR)

 SCR_008636https://scicrunch.org/resolver/SCR_008636  SciCrunch identifier (RRID:SCR_008636, Transfer RNA database)

 goeseek.gwdguser.de/studies/167https://goeseek.gwdguser.de/studies/167  Supplemental material (goeseek study)

 mbexc.de...nners/https://mbexc.de/gpatch4-regulates-rrna-and-snrna-2-o-methylation-in-both-dhx15-dependent-and-dhx15-independent-manners/  Website entry (mbexc.de)