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 nature.c...ce.pdfhttps://www.nature.com/articles/s41586-025-09477-y_reference.pdf  Article fulltext

 9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606  NCBI taxonomy (human, Homo sapiens)

 10090https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090  NCBI taxonomy (mouse, Mus musculus)

 0000-0002-5418-0962https://orcid.org/0000-0002-5418-0962  ORCID identifier (Maximilian Frosch)

 0000-0002-3432-3508https://orcid.org/0000-0002-3432-3508  ORCID identifier (Emile Wogram)

 0000-0002-8363-373Xhttps://orcid.org/0000-0002-8363-373X  ORCID identifier (Lukas Amann)

 0009-0009-9955-1550https://orcid.org/0009-0009-9955-1550  ORCID identifier (Lars Gruber)

 0000-0003-2309-7055https://orcid.org/0000-0003-2309-7055  ORCID identifier (Ayelén Ivana Groisman)

 0000-0002-3787-0427https://orcid.org/0000-0002-3787-0427  ORCID identifier (Maximilian Fliegauf)

 0000-0003-2205-5427https://orcid.org/0000-0003-2205-5427  ORCID identifier (Marius Schwabenland)

 0000-0002-5824-5209https://orcid.org/0000-0002-5824-5209  ORCID identifier (Chintan Chhatbar)

 0000-0001-5385-2766https://orcid.org/0000-0001-5385-2766  ORCID identifier (Sabrina Zechel)

 0000-0003-4692-5511https://orcid.org/0000-0003-4692-5511  ORCID identifier (Hendrik Rosewich)

 0000-0003-4108-7109https://orcid.org/0000-0003-4108-7109  ORCID identifier (Jutta Gärtner)

 0000-0001-8156-0736https://orcid.org/0000-0001-8156-0736  ORCID identifier (Francisco J. Quintana)

 0000-0002-6547-0076https://orcid.org/0000-0002-6547-0076  ORCID identifier (Jörg M. Büscher)

 0000-0002-3969-405Xhttps://orcid.org/0000-0002-3969-405X  ORCID identifier (Thomas Blank)

 0000-0002-5666-8662https://orcid.org/0000-0002-5666-8662  ORCID identifier (Harald Binder)

 0000-0003-1766-5458https://orcid.org/0000-0003-1766-5458  ORCID identifier (Christine Stadelmann-Nessler)

 0000-0001-5678-3030https://orcid.org/0000-0001-5678-3030  ORCID identifier (Johannes J. Letzkus)

 0000-0003-0802-6451https://orcid.org/0000-0003-0802-6451  ORCID identifier (Carsten Hopf)

 0000-0003-3687-452Xhttps://orcid.org/0000-0003-3687-452X  ORCID identifier (Takahiro Masuda)

 0000-0003-1587-1944https://orcid.org/0000-0003-1587-1944  ORCID identifier (Klaus-Peter Knobeloch)

 0000-0002-0349-1955https://orcid.org/0000-0002-0349-1955  ORCID identifier (Marco Prinz)

 249https://rdp.sfb274.de/literature/publications/249  Published Data Registry entry (TRR 274)

 1/638https://mbexc.uni-goettingen.de/archive/1/638  Research Data Archive (supplemental material)

 03vek6s52https://ror.org/03vek6s52  ROR identifier (03vek6s52, Harvard University)

 038t36y30https://ror.org/038t36y30  ROR identifier (038t36y30, Heidelberg University)

 00p4k0j84https://ror.org/00p4k0j84  ROR identifier (00p4k0j84, Kyushu University)

 042nb2s44https://ror.org/042nb2s44  ROR identifier (042nb2s44, Massachusetts Institute of Technology)

 058xzat49https://ror.org/058xzat49  ROR identifier (058xzat49, Max Planck Institute of Immunobiology and Epigenetics)

 05xy1nn52https://ror.org/05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 04p61dj41https://ror.org/04p61dj41  ROR identifier (04p61dj41, Technische Hochschule Mannheim)

 021ft0n22https://ror.org/021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 0245cg223https://ror.org/0245cg223  ROR identifier (0245cg223, University of Freiburg)

 03a1kwz48https://ror.org/03a1kwz48  ROR identifier (03a1kwz48, University of Tübingen)

 SCR_014199https://scicrunch.org/resolver/SCR_014199  SciCrunch identifier (RRID:SCR_014199, Adobe Photoshop)

 SCR_015058https://scicrunch.org/resolver/SCR_015058  SciCrunch identifier (RRID:SCR_015058, bcl2fastq)

 SCR_001456https://scicrunch.org/resolver/SCR_001456  SciCrunch identifier (RRID:SCR_001456, BD FACSDiva Software)

 SCR_019214https://scicrunch.org/resolver/SCR_019214  SciCrunch identifier (RRID:SCR_019214, biomaRt)

 SCR_026044https://scicrunch.org/resolver/SCR_026044  SciCrunch identifier (RRID:SCR_026044, Bruker MetaboScape)

 SCR_017344https://scicrunch.org/resolver/SCR_017344  SciCrunch identifier (RRID:SCR_017344, Cell Ranger)

 SCR_016884https://scicrunch.org/resolver/SCR_016884  SciCrunch identifier (RRID:SCR_016884, clusterProfiler)

 SCR_018931https://scicrunch.org/resolver/SCR_018931  SciCrunch identifier (RRID:SCR_018931, EnhancedVolcano)

 SCR_014583https://scicrunch.org/resolver/SCR_014583  SciCrunch identifier (RRID:SCR_014583, FastQC)

 SCR_014601https://scicrunch.org/resolver/SCR_014601  SciCrunch identifier (RRID:SCR_014601, ggplot2)

 SCR_002798https://scicrunch.org/resolver/SCR_002798  SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)

 SCR_023614https://scicrunch.org/resolver/SCR_023614  SciCrunch identifier (RRID:SCR_023614, Illumina NextSeq 2000 system)

 SCR_013673https://scicrunch.org/resolver/SCR_013673  SciCrunch identifier (RRID:SCR_013673, Leica Application Suite X)

 SCR_018169https://scicrunch.org/resolver/SCR_018169  SciCrunch identifier (RRID:SCR_018169, Leica SP8 LIGHTNING confocal microscope)

 SCR_016418https://scicrunch.org/resolver/SCR_016418  SciCrunch identifier (RRID:SCR_016418, pheatmap)

 SCR_001905https://scicrunch.org/resolver/SCR_001905  SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

 SCR_000432https://scicrunch.org/resolver/SCR_000432  SciCrunch identifier (RRID:SCR_000432, RStudio)

 SCR_022700https://scicrunch.org/resolver/SCR_022700  SciCrunch identifier (RRID:SCR_022700, scDblFinder)

 SCR_014426https://scicrunch.org/resolver/SCR_014426  SciCrunch identifier (RRID:SCR_014426, SCiLS Lab)

 SCR_007322https://scicrunch.org/resolver/SCR_007322  SciCrunch identifier (RRID:SCR_007322, Seurat)

 SCR_015899https://scicrunch.org/resolver/SCR_015899  SciCrunch identifier (RRID:SCR_015899, STAR)

 static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-025-09477-y/MediaObjects/41586_2025_9477_MOESM1_ESM.pdf  Supplemental material

 goeseek.gwdguser.de/studies/241https://goeseek.gwdguser.de/studies/241  Supplemental material (goeseek study)

 static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-025-09477-y/MediaObjects/41586_2025_9477_MOESM2_ESM.pdf  Supplemental material (reporting summary)

 static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-025-09477-y/MediaObjects/41586_2025_9477_MOESM3_ESM.xlsx  Supplemental material (table)