| Property |
Value |
| Working Groups |
RG Pape |
| Subproject |
None |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
40651941 |
| DOI |
10.1038/s41467-025-61579-3 |
| Publication Year |
2025 |
| Title |
Highly adaptable deep-learning platform for automated detection and analysis of vesicle exocytosis |
| Journal |
Nature Communications |
| ISSN |
2041-1723 |
| eISSN |
2041-1723 |
| URL |
https://doi.org/10.1038/s41467-025-61579-3 |
| Issue |
1 |
| Volume |
16 |
| Journal Abbreviation |
Nat Commun |
| Authors |
Chouaib AA, Chang H, Khamis OM, Alawar N, Echeverry S, Demeersseman L, Elizarova S, Daniel JA, Tian Q, Lipp P, Fornasiero EF, Valitutti S, Barg S, Pape C, Shaib AH, Becherer U |
| First Author |
Chouaib AA |
| Last Author |
Becherer U |
External Resources
nature.c...-3.pdfhttps://www.nature.com/articles/s41467-025-61579-3.pdf Article fulltext
2/150382http://resolver.sub.uni-goettingen.de/purl?2/150382 GRO.publications identifier
9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 NCBI taxonomy (human, Homo sapiens)
10090https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090 NCBI taxonomy (mouse, Mus musculus)
0009-0009-6973-1630https://orcid.org/0009-0009-6973-1630 ORCID identifier (Abed Alrahman Chouaib)
0000-0002-7691-4090https://orcid.org/0000-0002-7691-4090 ORCID identifier (Hsin-Fang Chang)
0009-0007-8175-9965https://orcid.org/0009-0007-8175-9965 ORCID identifier (Omnia M. Khamis)
0000-0002-8591-2513https://orcid.org/0000-0002-8591-2513 ORCID identifier (Nadia Alawar)
0000-0001-7145-9802https://orcid.org/0000-0001-7145-9802 ORCID identifier (Santiago Echeverry)
0000-0001-8404-4761https://orcid.org/0000-0001-8404-4761 ORCID identifier (Lucie Demeersseman)
0000-0002-5757-764Xhttps://orcid.org/0000-0002-5757-764X ORCID identifier (Sofia Elizarova)
0000-0002-2781-4544https://orcid.org/0000-0002-2781-4544 ORCID identifier (James A. Daniel)
0000-0002-1369-1643https://orcid.org/0000-0002-1369-1643 ORCID identifier (Qinghai Tian)
0000-0003-4728-9174https://orcid.org/0000-0003-4728-9174 ORCID identifier (Peter Lipp)
0000-0001-7643-4962https://orcid.org/0000-0001-7643-4962 ORCID identifier (Eugenio F. Fornasiero)
0000-0002-6432-4421https://orcid.org/0000-0002-6432-4421 ORCID identifier (Salvatore Valitutti)
0000-0003-4661-5724https://orcid.org/0000-0003-4661-5724 ORCID identifier (Sebastian Barg)
0000-0001-6562-7187https://orcid.org/0000-0001-6562-7187 ORCID identifier (Constantin Pape)
0009-0007-2656-3820https://orcid.org/0009-0007-2656-3820 ORCID identifier (Ali H. Shaib)
0000-0001-6005-7517https://orcid.org/0000-0001-6005-7517 ORCID identifier (Ute Becherer)
1121https://prod.mbexc.uni-goettingen.de/literature/publications/1121 Published Data Registry entry (MBExC, preprint)
1/632https://mbexc.uni-goettingen.de/archive/1/632 Research Data Archive (supplemental material)
003412r28https://ror.org/003412r28 ROR identifier (003412r28, Centre de Recherche en Cancérologie de Toulouse)
03av75f26https://ror.org/03av75f26 ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)
05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)
01jdpyv68https://ror.org/01jdpyv68 ROR identifier (01jdpyv68, Saarland University)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
01y9bpm73https://ror.org/01y9bpm73 ROR identifier (01y9bpm73, University of Göttingen)
02n742c10https://ror.org/02n742c10 ROR identifier (02n742c10, University of Trieste)
048a87296https://ror.org/048a87296 ROR identifier (048a87296, Uppsala University)
CVCL_0352https://scicrunch.org/resolver/CVCL_0352 SciCrunch identifier (RRID:CVCL_0352, INS-1)
SCR_010279https://scicrunch.org/resolver/SCR_010279 SciCrunch identifier (RRID:SCR_010279, Adobe Illustrator)
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SCR_024812https://scicrunch.org/resolver/SCR_024812 SciCrunch identifier (RRID:SCR_024812, h5py)
SCR_001622https://scicrunch.org/resolver/SCR_001622 SciCrunch identifier (RRID:SCR_001622, MATLAB)
SCR_002368https://scicrunch.org/resolver/SCR_002368 SciCrunch identifier (RRID:SCR_002368, MetaMorph)
SCR_016137https://scicrunch.org/resolver/SCR_016137 SciCrunch identifier (RRID:SCR_016137, Microsoft Excel)
SCR_008633https://scicrunch.org/resolver/SCR_008633 SciCrunch identifier (RRID:SCR_008633, NumPy)
SCR_018214https://scicrunch.org/resolver/SCR_018214 SciCrunch identifier (RRID:SCR_018214, Pandas)
SCR_008394https://scicrunch.org/resolver/SCR_008394 SciCrunch identifier (RRID:SCR_008394, Python)
SCR_021142https://scicrunch.org/resolver/SCR_021142 SciCrunch identifier (RRID:SCR_021142, scikit-image)
SCR_003210https://scicrunch.org/resolver/SCR_003210 SciCrunch identifier (RRID:SCR_003210, SigmaPlot)
SCR_016345https://scicrunch.org/resolver/SCR_016345 SciCrunch identifier (RRID:SCR_016345, tensorflow)
SCR_022546https://scicrunch.org/resolver/SCR_022546 SciCrunch identifier (RRID:SCR_022546, VisiView)
SCR_021351https://scicrunch.org/resolver/SCR_021351 SciCrunch identifier (RRID:SCR_021351, Zeiss Axio Observer)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM1_ESM.pdf Supplemental material
static-c...M.docxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM2_ESM.docx Supplemental material
github.com/AbedChouaib/IVEAhttps://github.com/AbedChouaib/IVEA Supplemental material (code)
goeseek.gwdguser.de/studies/246https://goeseek.gwdguser.de/studies/246 Supplemental material (goeseek study)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM9_ESM.pdf Supplemental material (peer review)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM8_ESM.pdf Supplemental material (reporting summary)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM10_ESM.xlsx Supplemental material (source data)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM3_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM4_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM5_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM6_ESM.mp4 Supplemental material (video)
static-c...SM.mp4https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-025-61579-3/MediaObjects/41467_2025_61579_MOESM7_ESM.mp4 Supplemental material (video)
mbexc.de...tosis/https://mbexc.de/highly-adaptable-deep-learning-platform-for-automated-detection-and-analysis-of-vesicle-exocytosis/ Website entry (mbexc.de)
10.5281/zenodo.13153017https://doi.org/10.5281/zenodo.13153017 Zenodo identifier (10.5281/zenodo.13153017)
10.5281/zenodo.1549813968https://doi.org/10.5281/zenodo.1549813968 Zenodo identifier (10.5281/zenodo.1549813968)