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Publication
PropertyValue
Working Groups RG Cyganek, RG Zimmermann
SubprojectNone
Open AccessOpen Access Yes
Publication TypePreprint
Peer ReviewedNo
DOIDOI 10.1101/2025.04.29.650605
Publication Year2025
TitleSarcAsM: AI-based multiscale analysis of sarcomere organization and contractility in cardiomyocytes
JournalbioRxiv
ISSNno ISSN (NLM ID:101680187)
URL https://doi.org/10.1101/2025.04.29.650605
Journal AbbreviationbioRxiv
ExtraNot yet finally published in a peer-reviewed journal, IRTG 1816, RTG 2824
AuthorsHärtter D, Hauke L, Driehorst T, Long Y, Bao G, Primeßnig A, Berečić B, Cyganek L, Tiburcy M, Schmidt CF, Zimmermann W
First AuthorHärtter D
Last AuthorZimmermann W

 External Resources

 biorxiv....ll.pdf  Article fulltext

 sfb1002....ne=358  Cell Model Catalogue (RUCDRi002-A-3)

 9606  NCBI taxonomy (human, Homo sapiens)

 0000-0002-9582-6141  ORCID identifier (Daniel Härtter)

 0000-0003-0777-6859  ORCID identifier (Lara Hauke)

 0000-0001-9120-1382  ORCID identifier (Lukas Cyganek)

 0000-0002-6942-6275  ORCID identifier (Malte Tiburcy)

 0000-0003-2864-6973  ORCID identifier (Christoph F. Schmidt)

 0000-0003-1190-4040  ORCID identifier (Wolfram Hubertus Zimmermann)

 556  Published Data Registry entry (CRC 1002)

 1/607  Research Data Archive (supplemental material)

 00py81415  ROR identifier (00py81415, Duke University)

 01s1h3j07  ROR identifier (01s1h3j07, Fraunhofer Institute for Translational Medicine and Pharmacology)

 031t5w623  ROR identifier (031t5w623, German Centre for Cardiovascular Research)

 05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 SCR_002630  SciCrunch identifier (RRID:SCR_002630, GitHub)

 SCR_020233  SciCrunch identifier (RRID:SCR_020233, Leica TCS SP5 Broadband Confocal Laser Scanning Microscope)

 SCR_022765  SciCrunch identifier (RRID:SCR_022765, Napari)

 SCR_008394  SciCrunch identifier (RRID:SCR_008394, Python)

 SCR_018536  SciCrunch identifier (RRID:SCR_018536, PyTorch)

 SCR_021142  SciCrunch identifier (RRID:SCR_021142, scikit-image)

 SCR_002577  SciCrunch identifier (RRID:SCR_002577, scikit-learn)

 SCR_023270  SciCrunch identifier (RRID:SCR_023270, Yokogawa CellVoyager CV8000)

 biorxiv....d=true  Supplemental material

 github.c...e-unet  Supplemental material (code)

 github.com/danihae/SarcAsM  Supplemental material (code)

 pypi.org/project/sarc-asm/  Supplemental material (code)

 sarcasm.readthedocs.io/  Supplemental material (code, documentation)

 hpscreg....i002-A  Supplemental material (hpscreg identifier)

 biorxiv....d=true  Supplemental material (video)

 biorxiv....d=true  Supplemental material (video)

 biorxiv....d=true  Supplemental material (video)

 biorxiv....d=true  Supplemental material (video)

 mbexc.de...cytes/  Website entry (mbexc.de)

 10.5281/zenodo.8232838  Zenodo identifier (10.5281/zenodo.8232838)

Linked Antibodies

PIDAGTypeAntigen symbolAntibody Registry IDName
primary-0102primaryACTN2AB_476766Anti-α-Actinin (Sarcomeric) antibody
primary-0797primaryGAPDHAB_2107436GAPDH Monoclonal antibody
secondary-1003secondaryAB_258167Anti-Mouse IgG (whole molecule)–Peroxidase antibody