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Publication
Property Value
Working Groups RG Urlaub
Subproject None
Open Access Open Access  Yes
Publication Type Journal Article
Peer Reviewed Yes
PMID PubMed ID  38467629
DOI DOI  10.1038/s41467-024-46371-z
Publication Year 2024
Title The thymocyte-specific RNA-binding protein Arpp21 provides TCR repertoire diversity by binding to the 3’-UTR and promoting Rag1 mRNA expression
Journal Nature Communications
ISSN 2041-1723
eISSN 2041-1723
URL  http://dx.doi.org/10.1038/s41467-024-46371-z
Issue 1
Volume 15
Journal Abbreviation Nat Commun
Authors Xu M, Ito-Kureha T, Kang H, Chernev A, Raj T, Hoefig KP, Hohn C, Giesert F, Wang Y, Pan W, Ziętara N, Straub T, Feederle R, Daniel C, Adler B, König J, Feske S, Tsokos GC, Wurst W, Urlaub H, Sattler M, Kisielow J, Wulczyn FG, Łyszkiewicz M, Heissmeyer V
First Author Xu M
Last Author Heissmeyer V

 External Resources

 12371 Addgene identifier (12371, reused)

 17442 Addgene identifier (17442, reused)

 nature.c...-z.pdf Article fulltext

 gencodeg...5.html Genecode (release M25)

 2/142385 GRO.publications identifier

 MSV000091606 MassIVE identifier (MSV000091606, DOI:10.25345/C5WM1440M)

 3038275 MGI identifier (MGI:3038275)

 5544760 MGI identifier (MGI:5544760)

 5883293 MGI identifier (MGI:5883293)

 3812419 MGI identifier (MGI:3812419)

 ncbi.nlm...35.26/ NCBI Datasets Genome (GRCm38.p6, reused)

 GSE198798 NCBI GEO identifier (GSE198798)

 GSE226368 NCBI GEO identifier (GSE226368)

 GSE226369 NCBI GEO identifier (GSE226369)

 511693 NCBI taxonomy (Escherichia coli BL21)

 0000-0003-3895-6422 ORCID identifier (Meng Xu)

 0000-0002-6239-9227 ORCID identifier (Taku Kureha)

 0000-0003-4029-5096 ORCID identifier (Hyun-Seo Kang)

 0000-0002-5065-8092 ORCID identifier (Timsse Raj)

 0000-0002-0701-454X ORCID identifier (Kai Hoefig)

 0000-0001-6825-8858 ORCID identifier (Florian Giesert)

 0000-0002-3637-8852 ORCID identifier (Yin-Hu Wang)

 0009-0003-5965-2126 ORCID identifier (Wenliang Pan)

 0000-0002-4597-6731 ORCID identifier (Natalia Ziętara)

 0000-0002-0547-0453 ORCID identifier (Tobias Straub)

 0000-0002-3981-367X ORCID identifier (Regina Feederle)

 0000-0003-4698-7069 ORCID identifier (Carolin Daniel)

 0000-0002-9398-5421 ORCID identifier (Julian König)

 0000-0001-5431-8178 ORCID identifier (Stefan Feske)

 0000-0001-9589-2360 ORCID identifier (George Tsokos)

 0000-0003-4422-7410 ORCID identifier (Wolfgang Wurst)

 0000-0003-1837-5233 ORCID identifier (Henning Urlaub)

 0000-0002-1594-0527 ORCID identifier (Michael Sattler)

 0000-0002-4482-5202 ORCID identifier (Jan Kisielow)

 0000-0001-9850-2444 ORCID identifier (F. Gregory Wulczyn)

 0000-0002-2263-8545 ORCID identifier (Vigo Heissmeyer)

 04drvxt59 ROR identifier (04drvxt59, Beth Israel Deaconess Medical Center)

 0493xsw21 ROR identifier (0493xsw21, Berlin Institute of Health at Charité - Universitätsmedizin Berlin)

 05a28rw58 ROR identifier (05a28rw58, ETH Zurich)

 04qq88z54 ROR identifier (04qq88z54, German Center for Diabetes Research)

 043j0f473 ROR identifier (043j0f473, German Center for Neurodegenerative Diseases)

 00cfam450 ROR identifier (00cfam450, Helmholtz Zentrum München)

 05kxtq558 ROR identifier (05kxtq558, Institute of Molecular Biology)

 05591te55 ROR identifier (05591te55, Ludwig-Maximilians-Universität München)

 03av75f26 ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)

 05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)

 025z3z560 ROR identifier (025z3z560, Munich Cluster of Systems Neurology)

 0190ak572 ROR identifier (0190ak572, New York University)

 02kkvpp62 ROR identifier (02kkvpp62, Technical University of Munich)

 01y9bpm73 ROR identifier (01y9bpm73, University of Göttingen)

 021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)

 05emabm63 ROR identifier (05emabm63, University Medical Center Ulm)

 0371fqr87 ROR identifier (0371fqr87, Wuhan Union Hospital)

 Addgene_12371 SciCrunch identifier (RRID:Addgene_12371, pCL-Eco)

 Addgene_17442 SciCrunch identifier (RRID:Addgene_17442, MSCV-IRES-Thy1.1)

 AB_2877798 SciCrunch identifier (RRID:AB_2877798, Arpp21)

 AB_2876392 SciCrunch identifier (RRID:AB_2876392, CD3 APC-Fire 810)

 AB_2870246 SciCrunch identifier (RRID:AB_2870246, CD4 BUV661)

 AB_10898318 SciCrunch identifier (RRID:AB_10898318, CD4 BV421)

 AB_2564587 SciCrunch identifier (RRID:AB_2564587, CD4 BV510)

 AB_2728707 SciCrunch identifier (RRID:AB_2728707, CD4 BV786)

 AB_11124344 SciCrunch identifier (RRID:AB_11124344, CD8 BV650)

 AB_2871881 SciCrunch identifier (RRID:AB_2871881, CD8 BV750)

 AB_464915 SciCrunch identifier (RRID:AB_464915, CD8 FITC)

 AB_2895935 SciCrunch identifier (RRID:AB_2895935, CD11c BUV737)

 AB_2739519 SciCrunch identifier (RRID:AB_2739519, CD11b BV480)

 AB_464940 SciCrunch identifier (RRID:AB_464940, CD11c FITC)

 AB_2565970 SciCrunch identifier (RRID:AB_2565970, CD19 BV711)

 AB_2563464 SciCrunch identifier (RRID:AB_2563464, CD24 BV605)

 AB_1834425 SciCrunch identifier (RRID:AB_1834425, CD24 PerCP-eFluor 710)

 AB_763472 SciCrunch identifier (RRID:AB_763472, CD25 AF488)

 AB_395101 SciCrunch identifier (RRID:AB_395101, CD25 PE)

 AB_2616762 SciCrunch identifier (RRID:AB_2616762, CD25 PE-Cy7)

 AB_914324 SciCrunch identifier (RRID:AB_914324, CD25 PerCP-Cy5.5)

 AB_2869776 SciCrunch identifier (RRID:AB_2869776, CD28 BB700)

 AB_312871 SciCrunch identifier (RRID:AB_312871, CD28 PE)

 AB_528811 SciCrunch identifier (RRID:AB_528811, CD43 PE-Cy5)

 AB_10895752 SciCrunch identifier (RRID:AB_10895752, CD44 BV421)

 AB_2561391 SciCrunch identifier (RRID:AB_2561391, CD44 BV510)

 AB_10900641 SciCrunch identifier (RRID:AB_10900641, CD44 BV570)

 AB_11203907 SciCrunch identifier (RRID:AB_11203907, CD45R/B220 BV605)

 AB_469627 SciCrunch identifier (RRID:AB_469627, CD45R/B220 PE-Cy7)

 AB_1963590 SciCrunch identifier (RRID:AB_1963590, CD62L eF450)

 AB_493564 SciCrunch identifier (RRID:AB_493564, CD69 PE-Cy7)

 AB_398536 SciCrunch identifier (RRID:AB_398536, CD117 APC)

 AB_2800691 SciCrunch identifier (RRID:AB_2800691, CD117 BV421)

 AB_2895995 SciCrunch identifier (RRID:AB_2895995, CD127 BUV737)

 AB_2107426 SciCrunch identifier (RRID:AB_2107426, Gapdh)

 AB_906247 SciCrunch identifier (RRID:AB_906247, Gr1 (Ly-6G/Ly-6C) PerCP-Cy5.5)

 AB_2662805 SciCrunch identifier (RRID:AB_2662805, Gr1 (Ly-6G/Ly-6C) SB645)

 AB_10660749 SciCrunch identifier (RRID:AB_10660749, Helios PE)

 AB_330924 SciCrunch identifier (RRID:AB_330924, HRP α-Mouse)

 AB_2099233 SciCrunch identifier (RRID:AB_2099233, HRP α-Rabbit)

 AB_10694715 SciCrunch identifier (RRID:AB_10694715, HRP α-Rat)

 AB_2571985 SciCrunch identifier (RRID:AB_2571985, IgD PE-Dazzle 594)

 AB_2875475 SciCrunch identifier (RRID:AB_2875475, IgM BUV615)

 AB_10899576 SciCrunch identifier (RRID:AB_10899576, IgM BV421)

 AB_2338618 SciCrunch identifier (RRID:AB_2338618, IgM FITC)

 AB_1272204 SciCrunch identifier (RRID:AB_1272204, MHC Class II (I-Ab) eFluor450)

 AB_2870785 SciCrunch identifier (RRID:AB_2870785, NK1.1 (CD161) BUV563)

 AB_10734230 SciCrunch identifier (RRID:AB_10734230, PAX5 APC)

 AB_2629684 SciCrunch identifier (RRID:AB_2629684, Sca1 (Ly-6A/E) BV650)

 AB_313425 SciCrunch identifier (RRID:AB_313425, TCRβ)

 AB_2740818 SciCrunch identifier (RRID:AB_2740818, TCRβ BUV395)

 AB_893627 SciCrunch identifier (RRID:AB_893627, TCRβ PE-Cy7)

 AB_1731813 SciCrunch identifier (RRID:AB_1731813, TCRγδ APC)

 AB_2744919 SciCrunch identifier (RRID:AB_2744919, TCRγδ SB780)

 AB_2870685 SciCrunch identifier (RRID:AB_2870685, Ter-119 BUV496)

 AB_628410 SciCrunch identifier (RRID:AB_628410, Tubulin)

 SCR_018043 SciCrunch identifier (RRID:SCR_018043, Bioanalyzer 2100)

 SCR_019826 SciCrunch identifier (RRID:SCR_019826, CYTEK Aurora)

 SCR_016695 SciCrunch identifier (RRID:SCR_016695, FACS Aria III BD)

 SCR_014583 SciCrunch identifier (RRID:SCR_014583, FastQC)

 SCR_008520 SciCrunch identifier (RRID:SCR_008520, FlowJo)

 SCR_000306 SciCrunch identifier (RRID:SCR_000306, GraphPad)

 SCR_010881 SciCrunch identifier (RRID:SCR_010881, Homer)

 SCR_018006 SciCrunch identifier (RRID:SCR_018006, Illumina HiSeq 1500)

 SCR_016379 SciCrunch identifier (RRID:SCR_016379, Illumina MiSeq)

 SCR_016582 SciCrunch identifier (RRID:SCR_016582, kallisto)

 SCR_018626 SciCrunch identifier (RRID:SCR_018626, LightCycler 480)

 SCR_014485 SciCrunch identifier (RRID:SCR_014485, MaxQuant software)

 SCR_018725 SciCrunch identifier (RRID:SCR_018725, MIXCR)

 SCR_023795 SciCrunch identifier (RRID:SCR_023795, MicroCal PEAQ-ITC)

 SCR_012042 SciCrunch identifier (RRID:SCR_012042, OpenMS)

 SCR_020573 SciCrunch identifier (RRID:SCR_020573, Orbitrap Fusion Tribrid)

 SCR_015753 SciCrunch identifier (RRID:SCR_015753, Perseus)

 SCR_020553 SciCrunch identifier (RRID:SCR_020553, Qubit)

 SCR_014228 SciCrunch identifier (RRID:SCR_014228, Sparky)

 SCR_004463 SciCrunch identifier (RRID:SCR_004463, STAR)

 SCR_014227 SciCrunch identifier (RRID:SCR_014227, TopSpin)

 UP000000589 UniProt Proteome identifier (UP000000589, reused)

 static-c...SM.pdf Supplemental material (Supplementary Information)

 static-c...SM.pdf Supplemental material (Peer Review File)

 static-c...SM.pdf Supplemental material (Description of Additional Supplementary Files)

 static-c...M.xlsx Supplemental material (Supplementary Data 1)

 static-c...SM.pdf Supplemental material (Reporting Summary)

 static-c...M.xlsx Supplemental material (Source data)

 mbexc.de...ssion/ Website entry (mbexc.de)

Linked Antibodies

PID AG Type Antigen symbol Antibody Registry ID Name
primary-1477 primary ARPP-21 AB_2877798 ARPP-21 antibody
primary-1478 primary CD3 AB_2876392 CD3 APC-Fire 810
primary-1479 primary CD4 AB_2870246 CD4 BUV661
primary-1480 primary CD4 AB_10898318 Brilliant Violet 421™ anti-mouse CD4 Antibody
primary-1481 primary CD4 AB_2564587 Brilliant Violet 510™ anti-mouse CD4 Antibody
primary-1482 primary CD4 AB_2728707 BV786 Rat Anti-Mouse CD4
primary-1483 primary CD8 AB_11124344 Brilliant Violet 650™ anti-mouse CD8a Antibody
primary-1484 primary CD8 AB_2871881 CD8A BV750
primary-1485 primary CD8 AB_464915 CD8a Monoclonal Antibody FITC
primary-1486 primary CD11 AB_2895935 CD11c Monoclonal Antibody (N418), Brilliant Ultra Violet™ 737
primary-1487 primary CD11b AB_2739519 BD Horizon™ BV480 Rat Anti-CD11b
primary-1488 primary CD11c AB_464940 CD11c Monoclonal Antibody (N418), FITC
primary-1489 primary CD19 AB_2565970 Brilliant Violet 711™ anti-mouse CD19 Antibody
primary-1490 primary CD24 AB_2563464 Brilliant Violet 605™ anti-mouse CD24 Antibody
primary-1491 primary CD24 AB_1834425 CD24 Monoclonal Antibody (M1/69), PerCP-eFluor™ 710
primary-1492 primary CD25 AB_763472 CD25 Monoclonal Antibody (PC61.5), Alexa Fluor™ 488
primary-1493 primary CD25 AB_395101 PE Rat Anti-Mouse CD25
primary-1494 primary CD25 AB_2616762 PE/Cyanine7 anti-mouse CD25 Antibody
primary-1495 primary CD25 AB_914324 CD25 Monoclonal Antibody (PC61.5), PerCP-Cyanine5.5
primary-1496 primary CD28 AB_2869776 BB700 Hamster Anti-Mouse CD28
primary-1497 primary CD28 AB_312871 PE anti-mouse CD28 Antibody
primary-1498 primary CD43 AB_528811 PE/Cyanine5 anti-mouse CD43 Activation-Associated Glycoform Antibody
primary-1499 primary CD44 AB_10895752 Brilliant Violet 421™ anti-mouse/human CD44 Antibody
primary-1500 primary CD44 AB_2561391 Brilliant Violet 510™ anti-mouse/human CD44 Antibody
primary-1501 primary CD44 AB_10900641 Brilliant Violet 570™ anti-mouse/human CD44 Antibody
primary-1502 primary CD45R AB_11203907 Brilliant Violet 605™ anti-mouse/human CD45R/B220 Antibody
primary-1503 primary CD45R AB_469627 CD45R (B220) Monoclonal Antibody (RA3-6B2), PE-Cyanine7
primary-1504 primary CD62L AB_1963590 CD62L (L-Selectin) Monoclonal Antibody (MEL-14), eFluor™ 450
primary-1505 primary CD69 AB_493564 PE/Cyanine7 anti-mouse CD69 Antibody
primary-1506 primary CD117 AB_398536 APC Rat Anti-Mouse CD117
primary-1507 primary CD117 AB_2800691 Brilliant Violet 421™ anti-mouse CD117 (c-kit) Recombinant Antibody
primary-1508 primary CD127 AB_2895995 CD127 Monoclonal Antibody (A7R34), Brilliant Ultra Violet™ 737
primary-1509 primary GADPH AB_2107426 Anti-GAPDH Mouse mAb (6C5)
primary-1510 primary AB_906247 Ly-6G/Ly-6C Monoclonal Antibody (RB6-8C5), PerCP-Cyanine5.5
primary-1511 primary AB_2662805 Ly-6G/Ly-6C Monoclonal Antibody (RB6-8C5), Super Bright™ 645
primary-1512 primary IKZF2 AB_10660749 PE anti-mouse/human Helios
primary-1516 primary IgD AB_2571985 PE/Dazzle™ 594 anti-mouse IgD Antibody
primary-1517 primary IgM AB_2875475 BUV615 Rat Anti-Mouse IgM
primary-1518 primary IgM AB_10899576 Brilliant Violet 421™ anti-mouse IgM Antibody
primary-1519 primary IgM AB_2338618 Fluorescein (FITC)-AffiniPure Fab Fragment Goat Anti-Mouse IgM, µ Chain Specific
primary-1520 primary AB_1272204 MHC Class II (I-A/I-E) Monoclonal Antibody (M5/114.15.2), eFluor™ 450
primary-1521 primary AB_2870785 BUV563 Mouse Anti-Mouse NK-1.1
primary-1522 primary PAX5 AB_10734230 PAX5 Monoclonal Antibody (1H9), APC
primary-1523 primary SCA1 AB_2629684 Brilliant Violet 650™ anti-mouse Ly-6A/E (Sca-1) Antibody
primary-1524 primary TRB AB_313425 anti-mouse TCR β chain Antibody
primary-1525 primary TRB AB_2740818 BUV395 Hamster Anti-Mouse TCR β Chain
primary-1526 primary TRB AB_893627 PE/Cyanine7 anti-mouse TCR β chain Antibody
primary-1527 primary TCR AB_1731813 APC Anti-mouse TCR γ/δ Antibody
primary-1528 primary AB_2744919 TCRγδ Monoclonal Antibody (eBioGL3 (GL-3, GL3)), Super Bright™ 780
primary-1529 primary TER-119 AB_2870685 BUV496 Rat Anti-Mouse TER-119/Erythroid Cells
primary-1530 primary TUBA AB_628410 alpha Tubulin (B-5-1-2)
secondary-1513 secondary AB_330924 Anti-mouse IgG, HRP-linked Antibody
secondary-1514 secondary AB_2099233 Anti-rabbit IgG, HRP-linked Antibody
secondary-1515 secondary AB_10694715 Anti-rat IgG, HRP-linked Antibody