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Publication
Property Value
Working Groups RG Rizzoli, RG Urlaub
Subproject RA2.2, RA3.1, RA3.2
Open Access No
Publication Type Journal Article
Peer Reviewed Yes
PMID PubMed ID  34168338
DOI DOI  10.1038/s41593-021-00874-w
Publication Year 2021
Title A large-scale nanoscopy and biochemistry analysis of postsynaptic dendritic spines
Journal Nature Neuroscience
ISSN 1097-6256
eISSN 1546-1726
URL  http://dx.doi.org/10.1038/s41593-021-00874-w
Journal Abbreviation Nat Neurosci
Authors Helm MS, Dankovich TM, Mandad S, Rammner B, Jähne S, Salimi V, Koerbs C, Leibrandt R, Urlaub H, Schikorski T, Rizzoli SO
First Author Helm MS
Last Author Rizzoli SO

 External Resources

 14757 Addgene identifier (14757, reused)

 2/88345 GRO.publications identifier

 10116 NCBI taxonomy (rat, Rattus norvegicus)

 0000-0002-6217-911X ORCID identifier (Martin S. Helm)

 0000-0003-4757-9462 ORCID identifier (Tal M. Dankovich)

 0000-0002-1651-2292 ORCID identifier (Sebastian Jähne)

 0000-0003-1837-5233 ORCID identifier (Henning Urlaub)

 0000-0002-1667-7839 ORCID identifier (Silvio-Olivier Rizzoli)

 PXD015308 Pride proteome dataset (PXD015308)

 148 Published Data Registry entry (CRC 1190)

 125 Published Data Registry entry (CRC 1286)

 1/73 Research Data Archive (supplemental material)

 01rpmzy83 ROR identifier (01rpmzy83, Central University of the Caribbean)

 03e76ya46 ROR identifier (03e76ya46, Max Planck Institute for Biophysical Chemistry)

 05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)

 02kkvpp62 ROR identifier (02kkvpp62, Technical University of Munich)

 021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)

 01y9bpm73 ROR identifier (01y9bpm73, University of Göttingen)

 SCR_002798 SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)

 SCR_014237 SciCrunch identifier (RRID:SCR_014237, Huygens)

 SCR_014627 SciCrunch identifier (RRID:SCR_014627, I-TASSER)

 SCR_010587 SciCrunch identifier (RRID:SCR_010587, Icy)

 SCR_014632 SciCrunch identifier (RRID:SCR_014632, IUPred)

 SCR_001622 SciCrunch identifier (RRID:SCR_001622, MATLAB)

 SCR_014485 SciCrunch identifier (RRID:SCR_014485, MaxQuant)

 SCR_016137 SciCrunch identifier (RRID:SCR_016137, Microsoft Excel)

 SCR_014329 SciCrunch identifier (RRID:SCR_014329, NIS-Elements)

 SCR_008394 SciCrunch identifier (RRID:SCR_008394, Python)

 static-c...SM.pdf Supplemental material

 goeseek.gwdguser.de/studies/141 Supplemental material (goeseek study)

 static-c...SM.pdf Supplemental material (reporting summary)

 static-c...M.xlsx Supplemental material (table)

 static-c...M.xlsx Supplemental material (table)

 static-c...M.xlsx Supplemental material (table)

 static-c...M.xlsx Supplemental material (table)

 static-c...M.xlsx Supplemental material (table)

 static-c...M.xlsx Supplemental material (table)

 mbexc.de...pines/ Website entry (mbexc.de)

Linked Antibodies

PID AG Type Antigen symbol Antibody Registry ID Name
primary-0006 primary CALM1 AB_725815 Anti-Calmodulin 1/2/3 antibody
primary-0118 primary SYP AB_1210382 Anti-Synaptophysin 1 antibody
primary-0126 primary SNAP91 AB_887691 Anti-AP 180 antibody
primary-0131 primary DNM1 AB_397640 Purified Mouse Anti-Dynamin Antibody
primary-0134 primary HSPA8 AB_627761 HSC 70 Antibody
primary-0137 primary NSF AB_887751 Anti-NSF antibody
primary-0138 primary RAB3 AB_397762 Rab3 antibody
primary-0141 primary SNAP23 AB_887788 Anti-SNAP 23 antibody
primary-0142 primary SNAP25 AB_887794 Anti-SNAP 25 antibody
primary-0146 primary SYT7 AB_887838 Anti-Synaptotagmin 7 antibody
primary-0148 primary STX16 AB_887799 Anti-Syntaxin 16 antibody
primary-0150 primary VAMP1 AB_887807 Anti-Synaptobrevin antibody
primary-0151 primary VAMP2 AB_887811 Anti-Synaptobrevin 2 antibody
primary-0155 primary VTI1A AB_398752 Vti1a antibody
primary-0205 primary RPS6 AB_331355 S6 Ribosomal Protein (5G10) Rabbit mAb
primary-0236 primary MAP2 AB_2138183 Anti-MAP 2 antibody
primary-0334 primary ANK3 AB_10673030 Anti-Ankyrin-G (Staining) Antibody
primary-0336 primary SYT5/9 AB_2199639 Anti-Synaptotagmin 5/9 antibody
primary-0492 primary HOMER1 AB_2120992 Anti-Homer 1 antibody
primary-0553 primary HOMER1 AB_887730 Anti-Homer 1 antibody
primary-0554 primary DLG4 AB_2292883 PSD95 (D27E11) XP® Rabbit mAb
primary-0592 primary APP AB_94882 Anti-APP A4 Antibody
primary-0688 primary ADAM22 ADAM22 Antibody
primary-0689 primary AKT1 AB_915783 Akt (pan) (C67E7) Rabbit mAb
primary-0690 primary ARC AB_887694 Arc antibody
primary-0691 primary SPTBN2 AB_399853 Purified Mouse Anti-β-Spectrin II
primary-0692 primary TUBB3 AB_10694505 β3-Tubulin (D71G9) XP Antibody
primary-0693 primary BDNF AB_10995734 BDNF antibody
primary-0694 primary CALB1 AB_2068199 Calbindin D28k antibody
primary-0695 primary PPP3CA AB_2661875 Calcineurin A antibody
primary-0696 primary CALR AB_2688013 Calreticulin (D3E6) XP® Antibody
primary-0697 primary CALB2 AB_11035704 Calretinin Antibody
primary-0698 primary CAMK2B AB_10675311 CaMKII monoclonal antibody
primary-0699 primary CAPS AB_1209327 Anti-CAPS1 antibody
primary-0700 primary CACNA1D AB_2340920 Anti-CaV1.3 Antibody
primary-0701 primary CACNA1A AB_2619841 Ca2+ channel P/Q-type alpha-1A antibody
primary-0702 primary CDC42 AB_2539858 Cdc42 Polyclonal Antibody
primary-0703 primary CHGA AB_2619972 Chromogranin A antibody
primary-0704 primary CHGB AB_2619973 Chromogranin B antibody
primary-0705 primary SCG2 AB_298964 Anti-Chromogranin C/SGII antibody
primary-0706 primary CLTC AB_397866 Clathrin Heavy Chain antibody
primary-0707 primary CLTB AB_887706 Clathrin light chain antibody
primary-0708 primary CTTN AB_2088122 Cortactin antibody
primary-0709 primary DLGAP1 AB_11017331 GKAP/DLGAP1 Antibody
primary-0710 primary DRD1 AB_732002 Anti-Dopamine Receptor D1 antibody
primary-0711 primary DRD2 AB_2094980 Anti-Dopamine D2 Receptor Antibody
primary-0712 primary DBN1 AB_2089489 Drebrin 1 Antibody
primary-0713 primary PDIA4 AB_10622112 ERp72 (D70D12) XP® antibody
primary-0714 primary GAD2 AB_2107894 GAD 2 / GAD 65 antibody
primary-0715 primary GFAP AB_2232308 GFAP antibody
primary-0716 primary GRIK1 AB_2039896 Anti-GRIK1 (GluK1) (extracellular) Antibody
primary-0717 primary GRIN1 AB_887750 GluN 1 antibody
primary-0718 primary GRIN2A AB_2315842 Anti-GluN2A/NR2A Antibody
primary-0719 primary GRIN2B AB_2232584 Anti-GluN2B/NR2B Glutamate Receptor Antibody
primary-0720 primary GRIA1 AB_2113441 GluA1 antibody
primary-0721 primary GRIA2 AB_2039881 Anti-GluR2 (GluA2) (extracellular) Antibody
primary-0722 primary GRIA3 AB_2533059 GluR3 Monoclonal Antibody
primary-0723 primary GRIP1 AB_10804287 GRIP antibody
primary-0724 primary HOMER2 AB_10807099 Homer 2 antibody
primary-0725 primary HOMER3 AB_10804288 Homer 3 antibody
primary-0726 primary AIF1 AB_2493179 IBA1 antibody
primary-0727 primary IGF1R AB_2122378 IGF-I Receptor β Antibody
primary-0728 primary KCNJ2 AB_11023524 Kir2.1 Antibody
primary-0729 primary KCNA1 AB_10978519 KCNA1 Polyclonal Antibody
primary-0730 primary KCNB1 AB_2131650 Kv2.1 antibody
primary-0731 primary NGFR AB_10839265 p75NTR (D4B3) XP® antibody
primary-0732 primary CHRM1 AB_11021120 Muscarinic Acetylcholine Receptor M1/CHRM1 Antibody
primary-0733 primary GRM1 AB_2279521 Anti-mGluR1a antibody
primary-0734 primary GRM2 AB_2715600 Recombinant Anti-Metabotropic Glutamate Receptor 2/MGLUR2 antibody
primary-0735 primary GRM5 AB_1523944 Recombinant Anti-Metabotropic Glutamate Receptor 5 antibody
primary-0736 primary MYO5A AB_260558 Anti-Myosin Va (LE-16) antibody
primary-0737 primary SCN1B AB_2341071 Anti-SCN1B (NaVβ1) (extracellular) Antibody
primary-0738 primary ATP1A3 AB_2274447 ATP1A3 Monoclonal Antibody
primary-0739 primary SCN1A AB_310253 Anti-Na+ Channel alpha, cardiac (III-IV loop) antibody
primary-0740 primary SCN3A AB_2040007 Anti-SCN3A (NaV1.3) Antibody
primary-0741 primary NEFH AB_10948043 PathPlusTM Polyclonal Rabbit anti‑Rat NEFH / NF‑H Antibody
primary-0742 primary NEFL AB_887743 Neurofilament L antibody
primary-0743 primary NOS1 AB_325021 nNOS Polyclonal Antibody
primary-0744 primary OLIG2 AB_2620030 Olig 2 antibody
primary-0745 primary PVALB AB_10000344 Rabbit anti-parvalbumin antibody
primary-0746 primary DLG2 AB_2533171 PSD93 Polyclonal Antibody
primary-0747 primary RAB11A/RAB11B AB_2253210 Rab11 Antibody
primary-0748 primary RAB4 AB_398205 Rab4 antibody
primary-0749 primary RAB7A AB_1904103 Rab7 (D95F2) XP® Rabbit mAb
primary-0750 primary RAB9A AB_10621426 Rab9A (D52G8) XP® Rabbit mAb
primary-0751 primary RAPSN AB_10794196 Anti-RAPSN Antibody
primary-0752 primary RPL7A AB_2182061 Ribosomal Protein L7a (R225) Antibody
primary-0753 primary RPS3 AB_10622028 Ribosomal Protein S3 (D50G7) XP® Rabbit mAb
primary-0754 primary SEC22B AB_993020 Sec 22b antibody
primary-0755 primary SEPTIN7 AB_10601573 Anti-SEPT7 Antibody
primary-0756 primary SHANK1 AB_2619859 Shank 1 antibody
primary-0757 primary SHANK2 AB_2619860 Shank 2 antibody
primary-0758 primary SHANK3 AB_2619862 Shank 3 antibody
primary-0759 primary NEFM AB_448147 Anti-200kDa + 160kDa Neurofilament antibody
primary-0760 primary SNAP29 AB_887795 SNAP 29 antibody
primary-0761 primary SNAP47 AB_887899 SNAP 47 antibody
primary-0762 primary SYT4 AB_2619771 Synaptotagmin 4 antibody
primary-0763 primary SYNGAP1 AB_2287112 SynGAP Polyclonal Antibody
primary-0764 primary STX1A AB_887844 Syntaxin 1 antibody
primary-0765 primary STX2 AB_887850 Syntaxin 2 antibody
primary-0766 primary STX3 AB_887851 Syntaxin 3 antibody
primary-0767 primary STX4 AB_887853 Syntaxin 4 antibody
primary-0768 primary STX5 AB_887800 Syntaxin 5 antibody
primary-0769 primary STX6 AB_2196500 Syntaxin 6 (C34B2) Rabbit mAb
primary-0770 primary STX8 AB_887855 Syntaxin 8 antibody
primary-0771 primary TGOLN2 AB_796176 Anti-TGN38 antibody
primary-0772 primary TOMM20 AB_1843992 Anti-TOMM20 antibody
primary-0773 primary TFRC AB_10673794 Anti-Transferrin Receptor antibody
primary-0774 primary NTRK2 AB_778636 Anti-TrkB antibody
primary-0775 primary SLC18A3 AB_887864 VAChT antibody
primary-0776 primary VAMP7 AB_1271093 Anti-SYBL1/VAMP-7 antibody