| Property |
Value |
| Working Groups |
RG Cramer |
| Subproject |
None |
| Open Access |
Yes |
| Publication Type |
Preprint |
| Peer Reviewed |
No |
| DOI |
10.1101/2021.03.18.435942 |
| Publication Year |
2021 |
| Title |
Sequence determinants of human gene regulatory elements |
| Journal |
bioRxiv |
| eISSN |
2692-8205 |
| URL |
http://dx.doi.org/10.1101/2021.03.18.435942 |
| Journal Abbreviation |
bioRxiv |
| Extra |
Final article published in Nature Genetics here: doi:10.1038/s41588-021-01009-4 |
| Authors |
Sahu B, Hartonen T, Pihlajamaa P, Wei B, Dave K, Zhu F, Kaasinen E, Lidschreiber K, Lidschreiber M, Daub CO, Cramer P, Kivioja T, Taipale J |
| First Author |
Sahu B |
| Last Author |
Taipale J |
External Resources
biorxiv....ll.pdfhttps://www.biorxiv.org/content/10.1101/2021.03.18.435942v1.full.pdf Article fulltext
ENST00000310581https://www.ensembl.org/Multi/Search/Results?q=ENST00000310581 Ensembl identifier (ENST00000310581)
2/100380https://publications.goettingen-research-online.de/handle/2/100380 GRO.publications identifier
9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606 NCBI taxonomy (human, Homo sapiens)
0000-0001-6576-5440https://orcid.org/0000-0001-6576-5440 ORCID identifier (Biswajyoti Sahu)
0000-0002-3295-8729https://orcid.org/0000-0002-3295-8729 ORCID identifier (Carsten Daub)
0000-0001-5454-7755https://orcid.org/0000-0001-5454-7755 ORCID identifier (Patrick Cramer)
0000-0003-4204-0951https://orcid.org/0000-0003-4204-0951 ORCID identifier (Jussi Taipale)
520https://prod.mbexc.uni-goettingen.de/literature/publications/520 Published Data Registry entry (MBExC, final article)
056d84691https://ror.org/056d84691 ROR identifier (056d84691, Karolinska Institutet)
03e76ya46https://ror.org/03e76ya46 ROR identifier (03e76ya46, Max Planck Institute for Biophysical Chemistry)
05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)
04ev03g22https://ror.org/04ev03g22 ROR identifier (04ev03g22, Science for Life Laboratory)
013meh722https://ror.org/013meh722 ROR identifier (013meh722, University of Cambridge)
040af2s02https://ror.org/040af2s02 ROR identifier (040af2s02, University of Helsinki)
CVCL_0063https://scicrunch.org/resolver/CVCL_0063 SciCrunch identifier (RRID:CVCL_0063, HEK293T)
CVCL_4388https://scicrunch.org/resolver/CVCL_4388 SciCrunch identifier (RRID:CVCL_4388, hTERT-RPE1)
SCR_015058https://scicrunch.org/resolver/SCR_015058 SciCrunch identifier (RRID:SCR_015058, bcl2fastq)
SCR_006646https://scicrunch.org/resolver/SCR_006646 SciCrunch identifier (RRID:SCR_006646, BEDTools)
SCR_005476https://scicrunch.org/resolver/SCR_005476 SciCrunch identifier (RRID:SCR_005476, Bowtie)
SCR_010910https://scicrunch.org/resolver/SCR_010910 SciCrunch identifier (RRID:SCR_010910, BWA)
SCR_015482https://scicrunch.org/resolver/SCR_015482 SciCrunch identifier (RRID:SCR_015482, Encode)
SCR_002344https://scicrunch.org/resolver/SCR_002344 SciCrunch identifier (RRID:SCR_002344, Ensembl)
SCR_002132https://scicrunch.org/resolver/SCR_002132 SciCrunch identifier (RRID:SCR_002132, Eukaryotic Promoter Database)
SCR_014583https://scicrunch.org/resolver/SCR_014583 SciCrunch identifier (RRID:SCR_014583, FastQC)
SCR_005531https://scicrunch.org/resolver/SCR_005531 SciCrunch identifier (RRID:SCR_005531, FLASH)
SCR_010881https://scicrunch.org/resolver/SCR_010881 SciCrunch identifier (RRID:SCR_010881, HOMER)
SCR_017237https://scicrunch.org/resolver/SCR_017237 SciCrunch identifier (RRID:SCR_017237, IDR)
SCR_018160https://scicrunch.org/resolver/SCR_018160 SciCrunch identifier (RRID:SCR_018160, liftOver)
SCR_013291https://scicrunch.org/resolver/SCR_013291 SciCrunch identifier (RRID:SCR_013291, MACS)
SCR_006525https://scicrunch.org/resolver/SCR_006525 SciCrunch identifier (RRID:SCR_006525, Picard)
SCR_018664https://scicrunch.org/resolver/SCR_018664 SciCrunch identifier (RRID:SCR_018664, Preseq)
SCR_001905https://scicrunch.org/resolver/SCR_001905 SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)
SCR_002105https://scicrunch.org/resolver/SCR_002105 SciCrunch identifier (RRID:SCR_002105, Samtools)
SCR_002577https://scicrunch.org/resolver/SCR_002577 SciCrunch identifier (RRID:SCR_002577, scikit-learn)
SCR_016345https://scicrunch.org/resolver/SCR_016345 SciCrunch identifier (RRID:SCR_016345, TensorFlow)
SCR_005780https://scicrunch.org/resolver/SCR_005780 SciCrunch identifier (RRID:SCR_005780, UCSC Genome Browser)
SCR_004129https://scicrunch.org/resolver/SCR_004129 SciCrunch identifier (RRID:SCR_004129, Zenodo)
mbexc.de...ments/https://mbexc.de/sequence-determinants-of-human-gene-regulatory-elements/ Website entry (mbexc.de)
Linked Antibodies
| PID |
AG |
Type |
Antigen symbol |
Antibody Registry ID |
Name |
| primary-0423 |
 |
primary |
|
AB_737167 |
Antibody isotype control goat IgG |
| primary-0640 |
|
primary |
H3K27ac |
AB_2637079 |
H3K27ac polyclonal antibody |
| primary-0641 |
|
primary |
H3K9me3 |
AB_2616044 |
H3K9me3 Antibody |
| primary-0642 |
|
primary |
H3K27me3 |
AB_2753161 |
H3K27me3 Antibody |
| primary-0643 |
|
primary |
FOXA1 |
AB_2104842 |
Anti-FOXA1 antibody |
| primary-0644 |
|
primary |
p53 |
AB_2017768 |
p-p53 (64.Ser 315) antibody |
| primary-0645 |
|
primary |
HNF4A |
AB_2116913 |
HNF-4α Antibody |
| primary-0646 |
|
primary |
CTCF |
AB_2086899 |
CTCF Antibody |
| primary-0647 |
|
primary |
SMC1A |
AB_2192467 |
SMC1 Antibody |
| primary-0648 |
|
primary |
|
AB_737197 |
normal rabbit IgG antibody |
| primary-0649 |
|
primary |
|
AB_737182 |
normal mouse IgG |