| Property |
Value |
| Working Groups |
RG Pape |
| Subproject |
None |
| Open Access |
Yes |
| Publication Type |
Journal Article |
| Peer Reviewed |
Yes |
| PMID |
39939717 |
| DOI |
10.1038/s41592-024-02580-4 |
| Publication Year |
2025 |
| Title |
Segment Anything for Microscopy |
| Journal |
Nature Methods |
| ISSN |
1548-7091 |
| eISSN |
1548-7105 |
| URL |
https://doi.org/10.1038/s41592-024-02580-4 |
| Journal Abbreviation |
Nat Methods |
| Authors |
Archit A, Freckmann L, Nair S, Khalid N, Hilt P, Rajashekar V, Freitag M, Teuber C, Buckley G, von Haaren S, Gupta S, Dengel A, Ahmed S, Pape C |
| First Author |
Archit A |
| Last Author |
Pape C |
External Resources
nature.c...-4.pdfhttps://www.nature.com/articles/s41592-024-02580-4.pdf Article fulltext
2/147971https://publications.goettingen-research-online.de/handle/2/147971 GRO.publications identifier
0009-0002-9533-8620https://orcid.org/0009-0002-9533-8620 ORCID identifier (Anwai Archit)
0000-0002-8285-2586https://orcid.org/0000-0002-8285-2586 ORCID identifier (Luca Freckmann)
0000-0001-9274-3757https://orcid.org/0000-0001-9274-3757 ORCID identifier (Nabeel Khalid)
0000-0002-3664-5156https://orcid.org/0000-0002-3664-5156 ORCID identifier (Vikas Rajashekar)
0009-0005-0920-2535https://orcid.org/0009-0005-0920-2535 ORCID identifier (Marei Freitag)
0009-0004-3866-191Xhttps://orcid.org/0009-0004-3866-191X ORCID identifier (Carolin Teuber)
0000-0003-2763-492Xhttps://orcid.org/0000-0003-2763-492X ORCID identifier (Genevieve Buckley)
0009-0000-9398-1968https://orcid.org/0009-0000-9398-1968 ORCID identifier (Sagnik Gupta)
0000-0002-6100-8255https://orcid.org/0000-0002-6100-8255 ORCID identifier (Andreas Dengel)
0000-0002-4239-6520https://orcid.org/0000-0002-4239-6520 ORCID identifier (Sheraz Ahmed)
0000-0001-6562-7187https://orcid.org/0000-0001-6562-7187 ORCID identifier (Constantin Pape)
753https://prod.mbexc.uni-goettingen.de/literature/publications/753 Published Data Registry entry (MBExC, preprint)
1/579https://mbexc.uni-goettingen.de/archive/1/579 Research Data Archive (supplemental material)
05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)
02bfwt286https://ror.org/02bfwt286 ROR identifier (02bfwt286, Monash University)
01qrts582https://ror.org/01qrts582 ROR identifier (01qrts582, Rheinland-Pfälzische Technische Universität Kaiserslautern-Landau)
01y9bpm73https://ror.org/01y9bpm73 ROR identifier (01y9bpm73, University of Göttingen)
SCR_021716https://scicrunch.org/resolver/SCR_021716 SciCrunch identifier (RRID:SCR_021716, Cellpose)
SCR_008624https://scicrunch.org/resolver/SCR_008624 SciCrunch identifier (RRID:SCR_008624, MatPlotLib)
SCR_008633https://scicrunch.org/resolver/SCR_008633 SciCrunch identifier (RRID:SCR_008633, NumPy)
SCR_018214https://scicrunch.org/resolver/SCR_018214 SciCrunch identifier (RRID:SCR_018214, Pandas)
SCR_008394https://scicrunch.org/resolver/SCR_008394 SciCrunch identifier (RRID:SCR_008394, Python)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41592-024-02580-4/MediaObjects/41592_2024_2580_MOESM1_ESM.pdf Supplemental material
github.c...ro-samhttps://github.com/computational-cell-analytics/micro-sam Supplemental material (code)
computat...m.htmlhttps://computational-cell-analytics.github.io/micro-sam/micro_sam.html Supplemental material (code)
computat...modelshttps://computational-cell-analytics.github.io/micro-sam/micro_sam.html#finetuned-models Supplemental material (code)
github.c...udy-v3https://github.com/computational-cell-analytics/user-study-v3 Supplemental material (code)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41592-024-02580-4/MediaObjects/41592_2024_2580_MOESM3_ESM.pdf Supplemental material (peer review)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41592-024-02580-4/MediaObjects/41592_2024_2580_MOESM2_ESM.pdf Supplemental material (reporting summary)
youtu.be/gcv0fa84mCchttps://youtu.be/gcv0fa84mCc Supplemental material (video)
youtu.be/9xjJBg_Bfuchttps://youtu.be/9xjJBg_Bfuc Supplemental material (video)
youtu.be/nqpyNQSyu74https://youtu.be/nqpyNQSyu74 Supplemental material (video)
youtu.be/1gg8OPHqOychttps://youtu.be/1gg8OPHqOyc Supplemental material (video)
youtu.be/HqRoImdTX3chttps://youtu.be/HqRoImdTX3c Supplemental material (video)
mbexc.de...scopy/https://mbexc.de/segment-anything-for-microscopy/ Website entry (mbexc.de)
10.5281/zenodo.14036956https://doi.org/10.5281/zenodo.14036956 Zenodo identifier (10.5281/zenodo.14036956)
10.5281/zenodo.14037020https://doi.org/10.5281/zenodo.14037020 Zenodo identifier (10.5281/zenodo.14037020)