| Property |
Value |
| Working Groups |
RG Brose, 
RG Fernandez-Busnadiego, 
RG Moser, 
RG Pape, 
RG Rizzoli, 
RG Wichmann |
| Subproject |
None |
| Open Access |
Yes |
| Publication Type |
Preprint |
| Peer Reviewed |
No |
| DOI |
10.1101/2024.12.02.626387 |
| Publication Year |
2024 |
| Title |
SynapseNet: Deep Learning for Automatic Synapse Reconstruction |
| Journal |
bioRxiv |
| eISSN |
2692-8205 |
| URL |
https://doi.org/10.1101/2024.12.02.626387 |
| Journal Abbreviation |
bioRxiv |
| Extra |
Final article published in Molecular Biology of the Cell here: doi:10.1091/mbc.e24-11-0519, Hertha Sponer College (HSC), CRC 889 |
| Authors |
Muth S, Moschref F, Freckmann L, Mutschall S, Hojas-Garcia-Plaza I, Bahr JN, Petrovic A, Do TT, Schwarze V, Archit A, Weyand K, Michanski S, Maus L, Imig C, Brose N, Wichmann C, Fernandez-Busnadiego R, Moser T, Rizzoli SO, Cooper BH, Pape C |
| First Author |
Muth S |
| Last Author |
Pape C |
External Resources
biorxiv....ll.pdfhttps://www.biorxiv.org/content/10.1101/2024.12.02.626387v1.full.pdf Article fulltext
2/149924https://publications.goettingen-research-online.de/handle/2/149924 GRO.publications identifier
10090https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090 NCBI taxonomy (mouse, Mus musculus)
8404https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=8404 NCBI taxonomy (northern leopard frog, Lithobates pipiens)
0009-0003-4337-7924https://orcid.org/0009-0003-4337-7924 ORCID identifier (Sarah Muth)
0000-0001-9432-1849https://orcid.org/0000-0001-9432-1849 ORCID identifier (Frederieke Moschref)
0000-0002-8285-2586https://orcid.org/0000-0002-8285-2586 ORCID identifier (Luca Freckmann)
0000-0002-8930-8268https://orcid.org/0000-0002-8930-8268 ORCID identifier (Inés Hojas García-Plaza)
0009-0005-1348-8839https://orcid.org/0009-0005-1348-8839 ORCID identifier (Julius N. Bahr)
0000-0003-4448-4230https://orcid.org/0000-0003-4448-4230 ORCID identifier (Arsen Petrovic)
0009-0004-2374-5803https://orcid.org/0009-0004-2374-5803 ORCID identifier (Thanh Thao Do)
0000-0001-9277-0122https://orcid.org/0000-0001-9277-0122 ORCID identifier (Valentin Schwarze)
0009-0002-9533-8620https://orcid.org/0009-0002-9533-8620 ORCID identifier (Anwai Archit)
0000-0001-5893-1981https://orcid.org/0000-0001-5893-1981 ORCID identifier (Susann Michanski)
0000-0002-3517-7792https://orcid.org/0000-0002-3517-7792 ORCID identifier (Lydia Maus)
0000-0001-7351-8706https://orcid.org/0000-0001-7351-8706 ORCID identifier (Cordelia Imig)
0000-0003-0938-8534https://orcid.org/0000-0003-0938-8534 ORCID identifier (Nils Brose)
0000-0001-8868-8716https://orcid.org/0000-0001-8868-8716 ORCID identifier (Carolin Wichmann)
0000-0002-8366-7622https://orcid.org/0000-0002-8366-7622 ORCID identifier (Ruben Fernandez-Busnadiego)
0000-0001-7145-0533https://orcid.org/0000-0001-7145-0533 ORCID identifier (Tobias Moser)
0000-0002-1667-7839https://orcid.org/0000-0002-1667-7839 ORCID identifier (Silvio-Olivier Rizzoli)
0000-0003-2374-9922https://orcid.org/0000-0003-2374-9922 ORCID identifier (Benjamin H. Cooper)
0000-0001-6562-7187https://orcid.org/0000-0001-6562-7187 ORCID identifier (Constantin Pape)
308https://sfb1286.uni-goettingen.de/literature/publications/308 Published Data Registry entry (CRC 1286)
1282https://prod.mbexc.uni-goettingen.de/literature/publications/1282 Published Data Registry entry (MBExC, final article)
03av75f26https://ror.org/03av75f26 ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)
05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)
021ft0n22https://ror.org/021ft0n22 ROR identifier (021ft0n22, University Medical Center Göttingen)
01y9bpm73https://ror.org/01y9bpm73 ROR identifier (01y9bpm73, University of Göttingen)
SCR_016501https://scicrunch.org/resolver/SCR_016501 SciCrunch identifier (RRID:SCR_016501, cryoSPARC)
SCR_002798https://scicrunch.org/resolver/SCR_002798 SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)
SCR_003297https://scicrunch.org/resolver/SCR_003297 SciCrunch identifier (RRID:SCR_003297, IMOD)
SCR_018536https://scicrunch.org/resolver/SCR_018536 SciCrunch identifier (RRID:SCR_018536, PyTorch)
SCR_021142https://scicrunch.org/resolver/SCR_021142 SciCrunch identifier (RRID:SCR_021142, scikit-image)
SCR_008058https://scicrunch.org/resolver/SCR_008058 SciCrunch identifier (RRID:SCR_008058, SciPy)
SCR_017293https://scicrunch.org/resolver/SCR_017293 SciCrunch identifier (RRID:SCR_017293, SerialEM)
github.c...se-nethttps://github.com/computational-cell-analytics/synapse-net Supplemental material (code)
cryoetda.../10330https://cryoetdataportal.czscience.com/depositions/10330 Supplemental material (figure)
mbexc.de...ction/https://mbexc.de/synapsenet-deep-learning-for-automatic-synapse-reconstruction/ Website entry (mbexc.de)
10.5281/zenodo.14232529https://doi.org/10.5281/zenodo.14232529 Zenodo identifier (10.5281/zenodo.14232529)
10.5281/zenodo.14232606https://doi.org/10.5281/zenodo.14232606 Zenodo identifier (10.5281/zenodo.14232606)
10.5281/zenodo.14254111https://doi.org/10.5281/zenodo.14254111 Zenodo identifier (10.5281/zenodo.14254111)
10.5281/zenodo.14236381https://doi.org/10.5281/zenodo.14236381 Zenodo identifier (10.5281/zenodo.14236381)
10.5281/zenodo.14236426https://doi.org/10.5281/zenodo.14236426 Zenodo identifier (10.5281/zenodo.14236426)