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 External Resources

 12259https://www.addgene.org/12259  Addgene identifier (12259, reused)

 12260https://www.addgene.org/12260  Addgene identifier (12260, reused)

 19780https://www.addgene.org/19780  Addgene identifier (19780, reused)

 79823https://www.addgene.org/79823  Addgene identifier (79823, reused)

 biorxiv....ll.pdfhttps://www.biorxiv.org/content/10.1101/2022.07.28.501854v2.full.pdf  Article fulltext

 EMD-15436https://www.ebi.ac.uk/pdbe/emdb/EMD-15436  EMBL-EBI EMDB identifier (EMD-15436)

 EMD-15437https://www.ebi.ac.uk/pdbe/emdb/EMD-15437  EMBL-EBI EMDB identifier (EMD-15437)

 EMD-15438https://www.ebi.ac.uk/pdbe/emdb/EMD-15438  EMBL-EBI EMDB identifier (EMD-15438)

 EMD-15439https://www.ebi.ac.uk/pdbe/emdb/EMD-15439  EMBL-EBI EMDB identifier (EMD-15439)

 EMD-15440https://www.ebi.ac.uk/pdbe/emdb/EMD-15440  EMBL-EBI EMDB identifier (EMD-15440)

 EMD-15441https://www.ebi.ac.uk/pdbe/emdb/EMD-15441  EMBL-EBI EMDB identifier (EMD-15441)

 EMD-15442https://www.ebi.ac.uk/pdbe/emdb/EMD-15442  EMBL-EBI EMDB identifier (EMD-15442)

 EMD-15443https://www.ebi.ac.uk/pdbe/emdb/EMD-15443  EMBL-EBI EMDB identifier (EMD-15443)

 EMD-15444https://www.ebi.ac.uk/pdbe/emdb/EMD-15444  EMBL-EBI EMDB identifier (EMD-15444)

 EMD-15453https://www.ebi.ac.uk/pdbe/emdb/EMD-15453  EMBL-EBI EMDB identifier (EMD-15453)

 EMD-15454https://www.ebi.ac.uk/pdbe/emdb/EMD-15454  EMBL-EBI EMDB identifier (EMD-15454)

 EMD-15455https://www.ebi.ac.uk/pdbe/emdb/EMD-15455  EMBL-EBI EMDB identifier (EMD-15455)

 EMD-15456https://www.ebi.ac.uk/pdbe/emdb/EMD-15456  EMBL-EBI EMDB identifier (EMD-15456)

 EMD-15457https://www.ebi.ac.uk/pdbe/emdb/EMD-15457  EMBL-EBI EMDB identifier (EMD-15457)

 EMD-15458https://www.ebi.ac.uk/pdbe/emdb/EMD-15458  EMBL-EBI EMDB identifier (EMD-15458)

 EMD-15459https://www.ebi.ac.uk/pdbe/emdb/EMD-15459  EMBL-EBI EMDB identifier (EMD-15459)

 EMD-15460https://www.ebi.ac.uk/pdbe/emdb/EMD-15460  EMBL-EBI EMDB identifier (EMD-15460)

 EMD-15461https://www.ebi.ac.uk/pdbe/emdb/EMD-15461  EMBL-EBI EMDB identifier (EMD-15461)

 EMD-15462https://www.ebi.ac.uk/pdbe/emdb/EMD-15462  EMBL-EBI EMDB identifier (EMD-15462)

 EMD-15463https://www.ebi.ac.uk/pdbe/emdb/EMD-15463  EMBL-EBI EMDB identifier (EMD-15463)

 EMD-15464https://www.ebi.ac.uk/pdbe/emdb/EMD-15464  EMBL-EBI EMDB identifier (EMD-15464)

 EMD-15466https://www.ebi.ac.uk/pdbe/emdb/EMD-15466  EMBL-EBI EMDB identifier (EMD-15466)

 EMD-15467https://www.ebi.ac.uk/pdbe/emdb/EMD-15467  EMBL-EBI EMDB identifier (EMD-15467)

 EMD-15468https://www.ebi.ac.uk/pdbe/emdb/EMD-15468  EMBL-EBI EMDB identifier (EMD-15468)

 EMD-15469https://www.ebi.ac.uk/pdbe/emdb/EMD-15469  EMBL-EBI EMDB identifier (EMD-15469)

 EMD-15470https://www.ebi.ac.uk/pdbe/emdb/EMD-15470  EMBL-EBI EMDB identifier (EMD-15470)

 EMD-15472https://www.ebi.ac.uk/pdbe/emdb/EMD-15472  EMBL-EBI EMDB identifier (EMD-15472)

 EMD-15474https://www.ebi.ac.uk/pdbe/emdb/EMD-15474  EMBL-EBI EMDB identifier (EMD-15474)

 0000-0002-6307-8441https://orcid.org/0000-0002-6307-8441  ORCID identifier (Saikat Chakraborty)

 0000-0002-5865-2138https://orcid.org/0000-0002-5865-2138  ORCID identifier (Antonio Martinez-Sanchez)

 0000-0001-8154-8809https://orcid.org/0000-0001-8154-8809  ORCID identifier (Wolfgang Baumeister)

 0000-0001-6968-041Xhttps://orcid.org/0000-0001-6968-041X  ORCID identifier (Julia Mahamid)

 PXD035700http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD035700  Pride proteome dataset (PXD035700)

 1/89https://mbexc.uni-goettingen.de/archive/1/89  Research Data Archive (supplemental material)

 1/407https://mbexc.uni-goettingen.de/archive/1/407  Research Data Archive (supplemental material)

 05xy1nn52https://ror.org/05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 021ft0n22https://ror.org/021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 CVCL_0045https://scicrunch.org/resolver/CVCL_0045  SciCrunch identifier (RRID:CVCL_0045, HEK293)

 CVCL_0030https://scicrunch.org/resolver/CVCL_0030  SciCrunch identifier (RRID:CVCL_0030, HeLa)

 SCR_001622https://scicrunch.org/resolver/SCR_001622  SciCrunch identifier (RRID:SCR_001622, MATLAB)

 biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2022/07/31/2022.07.28.501854/DC1/embed/media-1.pdf?download=true  Supplemental material

 github.com/williamnwan/TOMOMANhttps://github.com/williamnwan/TOMOMAN  Supplemental material (code)

 github.c...systemhttps://github.com/anmartinezs/pyseg_system  Supplemental material (code)

 biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2024/02/23/2022.07.28.501854/DC1/embed/media-1.pdf?download=true  Supplemental material (version 2)

 biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2022/07/31/2022.07.28.501854/DC2/embed/media-2.mp4?download=true  Supplemental material (video)

 biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2022/07/31/2022.07.28.501854/DC3/embed/media-3.mp4?download=true  Supplemental material (video)

 biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2022/07/31/2022.07.28.501854/DC4/embed/media-4.mp4?download=true  Supplemental material (video)

 biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2022/07/31/2022.07.28.501854/DC5/embed/media-5.mp4?download=true  Supplemental material (video)

 biorxiv....d=truehttps://www.biorxiv.org/content/biorxiv/early/2022/07/31/2022.07.28.501854/DC6/embed/media-6.mp4?download=true  Supplemental material (video)

 mbexc.de...ation/https://mbexc.de/cryo-electron-tomography-reveals-enrichment-and-identifies-microtubule-lumenal-particles-in-neuronal-differentiation/  Website entry (mbexc.de)