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Publication
PropertyValue
Working Groups RG Cramer
SubprojectNone
Open AccessOpen Access Yes
Publication TypeJournal Article
PMIDPubMed ID 35190730
DOIDOI 10.1038/s41588-021-01009-4
Publication Year2022
TitleSequence determinants of human gene regulatory elements
JournalNature Genetics
ISSN1061-4036
ESSN1546-1718
URL http://dx.doi.org/10.1038/s41588-021-01009-4
Pages283-294
Issue3
Volume54
Journal AbbreviationNat Genet
AuthorsSahu B, Hartonen T, Pihlajamaa P, Wei B, Dave K, Zhu F, Kaasinen E, Lidschreiber K, Lidschreiber M, Daub CO, Cramer P, Kivioja T, Taipale J
First AuthorSahu B
Last AuthorTaipale J

 External Resources

 nature.c...-4.pdf  Article fulltext

 ENST00000310581  Ensembl identifier (ENST00000310581)

 gro-2/105970  GRO.publications identifier

 0000-0001-6576-5440  ORCID identifier (Biswajyoti Sahu)

 0000-0002-3295-8729  ORCID identifier (Carsten Daub)

 0000-0001-5454-7755  ORCID identifier (Patrick Cramer)

 0000-0003-4204-0951  ORCID identifier (Jussi Taipale)

 289  Published Data Registry entry (MBExC, preprint)

 03e76ya46  ROR identifier (03e76ya46, Max Planck Institute for Biophysical Chemistry)

 05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 SCR_015058  SciCrunch identifier (RRID:SCR_015058, bcl2fastq)

 SCR_006646  SciCrunch identifier (RRID:SCR_006646, BEDTools)

 SCR_005476  SciCrunch identifier (RRID:SCR_005476, Bowtie)

 SCR_010910  SciCrunch identifier (RRID:SCR_010910, BWA)

 SCR_015482  SciCrunch identifier (RRID:SCR_015482, Encode)

 SCR_002344  SciCrunch identifier (RRID:SCR_002344, Ensembl)

 SCR_002132  SciCrunch identifier (RRID:SCR_002132, Eukaryotic Promoter Database)

 SCR_014583  SciCrunch identifier (RRID:SCR_014583, FastQC)

 SCR_005531  SciCrunch identifier (RRID:SCR_005531, FLASH)

 SCR_010881  SciCrunch identifier (RRID:SCR_010881, HOMER)

 SCR_017237  SciCrunch identifier (RRID:SCR_017237, IDR)

 SCR_018160  SciCrunch identifier (RRID:SCR_018160, LiftOver)

 SCR_013291  SciCrunch identifier (RRID:SCR_013291, MACS)

 SCR_006525  SciCrunch identifier (RRID:SCR_006525, Picard)

 SCR_018664  SciCrunch identifier (RRID:SCR_018664, Preseq)

 SCR_001905  SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

 SCR_002105  SciCrunch identifier (RRID:SCR_002105, Samtools)

 SCR_002577  SciCrunch identifier (RRID:SCR_002577, scikit-learn)

 SCR_016345  SciCrunch identifier (RRID:SCR_016345, TensorFlow)

 SCR_005780  SciCrunch identifier (RRID:SCR_005780, UCSC Genome Browser)

 SCR_004129  SciCrunch identifier (RRID:SCR_004129, Zenodo)

Linked Antibodies

PIDAGTypeAntigen symbolAntibody Registry IDName
primary-0640primaryH3K27acAB_2637079H3K27ac polyclonal antibody
primary-0641primaryH3K9me3AB_2616044H3K9me3 Antibody
primary-0642primaryH3K27me3AB_2753161H3K27me3 Antibody
primary-0643primaryFOXA1 AB_2104842Anti-FOXA1 antibody
primary-0645primaryHNF4AAB_2116913HNF-4α Antibody
primary-0646primaryCTCFAB_2086899CTCF Antibody
primary-0647primarySMC1A AB_2192467SMC1 Antibody
primary-0648primaryAB_737197normal rabbit IgG antibody
primary-0649primaryAB_737182normal mouse IgG
primary-0650primaryAB_737167normal goat IgG antibody
primary-1048primaryTP53 AB_628082Anti-p53 Antibody (DO-1)
primary-1049primaryIRF3 AB_627826Anti-IRF-3 Antibody (SL-12)