.gitignore
Fig_2.pdf
Fig_2_.pdf
LICENSE
README.md
pyproject.toml
requirements.txt
test.pdf
.github/workflows/eda_ci.yml
.github/workflows/welcome-pull_request.yml
notebooks/Figure_1_plots.ipynb
notebooks/HIVandSTI_first_test.ipynb
notebooks/Nobs_Nreal_derivatives.ipynb
notebooks/NotebookForPrEP.ipynb
notebooks/STI_model_sweep.ipynb
notebooks/analytical_solution.ipynb
notebooks/basic_model.ipynb
notebooks/bigHIVmodel.ipynb
notebooks/implicitanother.py
notebooks/implicitnotsolved.py
notebooks/lambdaP_vs_P.ipynb
notebooks/min_PrEP_VS_lambda_P copy.ipynb
notebooks/min_PrEP_VS_lambda_P.ipynb
notebooks/miscellanea_for_fig_1.py
notebooks/model_params.txt
notebooks/model_params_HIVandSTI.txt
notebooks/model_sweep.ipynb
notebooks/model_sweep_P_H_lambda.ipynb
notebooks/modified_STI_model_sweep.ipynb
notebooks/modified_STI_model_sweep_all.ipynb
notebooks/notebook_for_final_fig.ipynb
notebooks/numerical_solution.ipynb
notebooks/temp1.ipynb
notebooks/temp2.ipynb
notebooks/temp3.ipynb
notebooks/temp4.ipynb
notebooks/temp5.ipynb
notebooks/test.ipynb
notebooks/BifurcationAnalysis/R_o
notebooks/BifurcationAnalysis/alpha.py
notebooks/Fabio/Figure_1_plots.ipynb
notebooks/Fabio/Nobs_Nreal_derivatives.ipynb
notebooks/Fabio/colorbar_only.pdf
notebooks/Fabio/colorbar_only.png
notebooks/Fabio/miscellanea.py
notebooks/Fabio/model_params.txt
notebooks/Fabio/model_params_HIVandSTI.txt
notebooks/Fabio/notebook_for_final_fig.ipynb
results/Nreal_Nobs_values_and_derivatives_lambdap1_betaSTI0.008.npy
results/Nreal_Nobs_values_and_derivatives_lambdap1_betaSTI0.0112.npy
results/Nreal_Nobs_values_and_derivatives_lambdap2_betaSTI0.008.npy
results/Nreal_Nobs_values_and_derivatives_lambdap2_betaSTI0.0112.npy
results/Nreal_Nobs_values_and_derivatives_lambdap4_betaSTI0.008.npy
results/Nreal_Nobs_values_and_derivatives_lambdap4_betaSTI0.0112.npy
results/exp_m_gammaT_1by14.npy
results/exp_m_gammaT_1by14_lambdaP.npy
results/results_discrete_H.npy
results/results_discrete_H_log.npy
results/results_from_modified_sti_sweep.npy
results/results_sweep_all.npy
results/test.npy
src/tapm/__init__.py
src/tapm/_version.py
src/tapm/calculate_y0.py
src/tapm/miscellanea.py
src/tapm/utils.py
src/tapm.egg-info/PKG-INFO
src/tapm.egg-info/SOURCES.txt
src/tapm.egg-info/dependency_links.txt
src/tapm.egg-info/requires.txt
src/tapm.egg-info/top_level.txt
src/tapm/HIVandSTI/model_HIVandSTI.py
src/tapm/HIVandSTI/__pycache__/model_HIVandSTI.cpython-311.pyc
src/tapm/STI/model_STI.py
src/tapm/STI/sti_infection_results_H.py
src/tapm/STI/sti_infection_results_LambdaP.py
src/tapm/STI/__pycache__/model_STI.cpython-311.pyc
src/tapm/STI/__pycache__/sti_infection_results_H.cpython-311.pyc
src/tapm/STI/__pycache__/sti_infection_results_LambdaP.cpython-311.pyc
src/tapm/__pycache__/__init__.cpython-311.pyc
src/tapm/__pycache__/utils.cpython-311.pyc
tests/HIVandSTI/test_model_HIVandSTI.py
tests/STI/test_model_sti.py
tests/STI/test_sti_infection_results_H.py
tests/STI/test_sti_infection_results_LambdaP.py