####---- Upstream Regulator (Activated / Inhibited Network Plots) ----####

plot_height = 1000
plot_width = 1000
activated_node_colours = default_four_tone_network_node_colours_high
inhibited_node_colours = default_four_tone_network_node_colours_low
node_outer_max_size = 10
node_inner_max_size = 8
node_label_size = 3
edge_colour = default_network_edge_colour
edge_transparency = 0.5
edge_width = 4

<*per_ura*>
ggp = make_ura_network_plot(<*type*>_activated_ura_edges,<*type*>_activated_ura_nodes,activated_node_colours,inhibited_node_colours,node_outer_max_size,node_inner_max_size,node_label_size,edge_colour,edge_transparency,edge_width, TRUE)
save_plot(ggp,plot_height,plot_width,"<*path*>plots/upstream_regulator_analysis/<*type*>/activated_and_inhibited_gene_sets_network_plot.png<*/path*>")

ggp = make_ura_network_plot(<*type*>_activated_ura_edges,<*type*>_activated_ura_nodes,activated_node_colours,inhibited_node_colours,node_outer_max_size,node_inner_max_size,node_label_size,edge_colour,edge_transparency,edge_width, FALSE)
save_plot(ggp,plot_height,plot_width,"<*path*>plots/upstream_regulator_analysis/<*type*>/activated_and_inhibited_gene_sets_network_plot_unlabelled.png<*/path*>")

<*/per_ura*>

