####---- ORA Enriched Gene Sets (Network Plots) ----####

node_colours = default_two_tone_network_node_colours
plot_height = 2000
plot_width = 2000
node_outer_max_size = 10
node_inner_max_size = 8
node_label_size = 3

<*per_ora*>
ggp = make_ora_network_plot(<*type*>_all_significant_gene_sets_edges,<*type*>_all_significant_gene_sets_nodes,node_colours,node_outer_max_size,node_inner_max_size,node_label_size,TRUE)
save_plot(ggp,plot_height,plot_width,"<*path*>plots/over_representation_analysis/<*type*>/enriched_amongst_all_significant_genes/enriched_gene_sets_network_plot.png<*/path*>")

ggp = make_ora_network_plot(<*type*>_upregulated_gene_sets_edges,<*type*>_upregulated_gene_sets_nodes,node_colours,node_outer_max_size,node_inner_max_size,node_label_size, TRUE)
save_plot(ggp,plot_height,plot_width,"<*path*>plots/over_representation_analysis/<*type*>/enriched_amongst_upregulated_genes/enriched_gene_sets_network_plot.png<*/path*>")

ggp = make_ora_network_plot(<*type*>_downregulated_gene_sets_edges,<*type*>_downregulated_gene_sets_nodes,node_colours,node_outer_max_size,node_inner_max_size,node_label_size, TRUE)
save_plot(ggp,plot_height,plot_width,"<*path*>plots/over_representation_analysis/<*type*>/enriched_amongst_downregulated_genes/enriched_gene_sets_network_plot.png<*/path*>")

ggp = make_ora_network_plot(<*type*>_all_significant_gene_sets_edges,<*type*>_all_significant_gene_sets_nodes,node_colours,node_outer_max_size,node_inner_max_size,node_label_size, FALSE)
save_plot(ggp,plot_height,plot_width,"<*path*>plots/over_representation_analysis/<*type*>/enriched_amongst_all_significant_genes/enriched_gene_sets_network_plot_unlabelled.png<*/path*>")

ggp = make_ora_network_plot(<*type*>_upregulated_gene_sets_edges,<*type*>_upregulated_gene_sets_nodes,node_colours,node_outer_max_size,node_inner_max_size,node_label_size, FALSE)
save_plot(ggp,plot_height,plot_width,"<*path*>plots/over_representation_analysis/<*type*>/enriched_amongst_upregulated_genes/enriched_gene_sets_network_plot_unlabelled.png<*/path*>")

ggp = make_ora_network_plot(<*type*>_downregulated_gene_sets_edges,<*type*>_downregulated_gene_sets_nodes,node_colours,node_outer_max_size,node_inner_max_size,node_label_size, FALSE)
save_plot(ggp,plot_height,plot_width,"<*path*>plots/over_representation_analysis/<*type*>/enriched_amongst_downregulated_genes/enriched_gene_sets_network_plot_unlabelled.png<*/path*>")

<*/per_ora*>

